Detail information of GWHGAAEX015813/evm.TU.scaffold_7.280


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|430746360|ref|YP_007205489.1|5.00E-104beta-hydroxyacid dehydrogenase [Singulisphaera acidiphila DSM 18658]
KOGKOG04094.00E-153Predicted dehydrogenase
nrgi|743756119|ref|XP_010915212.1|2.13E-170PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial [Elaeis guineensis]
Swissprottr|Q9SZE1|3HID1_ARATH1.00E-153Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial (Precursor)
trEMBLtr|I1HRE8|I1HRE8_BRADI3.00E-161Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G49440.1}
TAIRAT4G291204.00E-1536-phosphogluconate dehydrogenase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000051160923011610667+
Transcript Sequence

Network for GWHGAAEX015813

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03446.14NAD_binding_2452012.80E-44
PF14833.5NAD_binding_112073242.20E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00020mmsB, HIBADH Metabolic pathways map01100
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0051287Molecular FunctionNAD binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0050661Molecular FunctionNADP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms22.180
SRR2545915Juvenile tuber22.840
SRP108465SRR5643513five period of Gastrodia elata54.610
SRR5643514five period of Gastrodia elata48.680
SRR5643515five period of Gastrodia elata49.240
SRR5643524five period of Gastrodia elata57.330
SRR5643525five period of Gastrodia elata55.340
SRR5643528five period of Gastrodia elata109.890
SRR5643658five period of Gastrodia elata121.360
SRR5643659five period of Gastrodia elata42.620
SRR5643660five period of Gastrodia elata42.320
SRR5643661five period of Gastrodia elata49.350
SRR5643662five period of Gastrodia elata51.790
SRR5643663five period of Gastrodia elata45.230
SRR5643664five period of Gastrodia elata49.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_150.160
SRR6049655Rhizomagastrodiae_C368-T10_good_146.260
SRR6049656Rhizomagastrodiae_C368-T07_good_157.840
SRR6049657Rhizomagastrodiae_C368-T07_good_142.560
SRR6049658Rhizomagastrodiae_C368-T04_good_138.250
SRR6049659Rhizomagastrodiae_C368-T04_good_138.150
SRR6049660Rhizomagastrodiae_C368-T01_good_142.300
SRR6049661Rhizomagastrodiae_C368-T04_good_138.750
SRR6049662Rhizomagastrodiae_C368-T01_good_165.000
SRR6049663Rhizomagastrodiae_C368-T01_good_151.040
SRR6049664Rhizomagastrodiae_C368-T10_good_165.330
SRR6049665Rhizomagastrodiae_C368-T10_good_165.330
SRP279888GastroGastrodia elata tuber 56.29
JuvenJuvenile tuber84.39
Mother_GastroMother tuber of Gastrodia elata 60.63
Mother_JuvenMother tuber of Juvenile 111.47