Gene detail

Detail information of GWHGAAEX015825/evm.TU.scaffold_7.296

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262194905\|ref\|YP_003266114.1\|	5.00E-52	actin/actin family protein [Haliangium ochraceum DSM 14365]
KOG	KOG0677	0	Actin-related protein Arp2/3 complex, subunit Arp2
nr	gi\|703160039\|ref\|XP_010112402.1\|	0	hypothetical protein L484_010807 [Morus notabilis]
Swissprot	tr\|Q9LSD6\|ARP2_ARATH	0	Actin-related protein 2
trEMBL	tr\|M4QSQ0\|M4QSQ0_9ERIC	0	Actin {ECO:0000313\|EMBL:AGH32898.1}
TAIR	AT3G27000	0	actin related protein 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	11754313	11781538	-

Transcript Sequence
>GWHTAAEX015825 ATAGATTGTCGGGCGATGTTATCTTAATTAGAAGGAATCGCATCATCAGAGATGGGTAGTAAAAATGTAGTCGTCTGCGACAACGGTACAGGGTACGTGAAATGTGGTTTTGCCGGTGAAAACTTTCCAACTTCCGTGTTTCCTTGTGTGGTTGGTAGACCAATGCTGCGGTACGAGGAATCATTCATTGAACAAGAGCTGAAGGACATTGTTGTGGGAGAATCTTGTGCAGATTTTAGAAATCAACTTGAAATTTCTTACCCTGTCAATAATGGGATTGTACAGAACTGGGATGATATGGCCCATGTATGGGATCATGCATTTTTTAATGAATTAAAGATTGATCCCACTGAATGCAAAATTCTACTCACAGATCCACCTCTTAATCCATCTAAAAACCGTGATAAAATGGTAGAAATCATGTTTGAGAAGTACAATTTTGCTGGTGTCTTCATTCAAATCCAAGCTGTTCTAACATTATATGCTCAAGGATTGCTAACCGGTCTTGTCATTGACTCAGGAGATGGTGTGACACATGTGGTGCCTGTTGTAGATGGTTACTCTTTTCCACATCTTACTAAGAGAATGAATGTAGCCGGCAGACACATCACATCATATCTTGTGGATCTACTTTCTAGAAGGGGGTACTCAATGAACAGGTCAGCAGATTTTGAAACAGTAAGGGATATAAAGGAGAGACTCTGTTATACCAGCTATGATTACAAACGTGAATACCAACTTGGTCTTGAAACTACCATTCTCGTAAAAAACTACACTCTACCAGATGGAAGAATCATAAAAGTCGGCACGGAGAGGTTCCAGGCTCCTGAGGCTCTTTTCACCCCGGAGCTTATAGATGTTGAAGGTGATGGCATGGCAGACATGGCGTTTAGATGCATTCAGGAAATGGATATTGATAATCGGATGATGCTTTACCAACATATTGTTCTTAGTGGAGGGAGTACCATGTATCCTGGATTGCCCAGCCGCTTGGAGAAAGAAATACTTGACCAATATCTTGAAGCAGTATTGAAGGGAAACAAAGATGGATTAAAGAAGCTGCGCTTACGAATAGAAGATCCGCCACGAAGAAAACACATGGTGTACCTAGGAGGTGCAGTTCTTGCAGGAATCATGAAGGATGCACCAGAATTTTGGATTAACAGGCAGGATTACATGGAAGAAGGGTTGGCTTGTCTCAAGAAATGTGGCCAAGTGTGATTCAATATGAGGTTTAATTGCTTGACACTTGGATAATATCTACCATCACACTTAAAGATTAATATTTACCATTGTAGTGGAGTATGAGAATATTTAATGCCTAAATGGGGTGGTAGCTGTGATTTGTTAAGAAGATTTGAGTGCTATTGATGTAAATATGAAACTCCAGGGCTGATTTCAGTAGTGTGTTTGAAGTTTTCTACAAGTATTAAAAAAATTAAAATATGGTGTCAAGCTTGTGCTGATGAGAGGCTTCAGTTCAGCAGGCAATCGTTGGATCTGTTTGAGCCAGCTTTTTTCATATGCTGCTTTGTAAAAGATTGTTGTTTATTTTGAACTATTGTTGAATAGTTTTTTCTTGCTGTTTTTTTTTCTCTTAAAAAGTGCTGTTAGGAACGCAGTTGGGTCACGAATTCATAATTGATTTTTATTTTTAAAGGTGTGATTTTGTGAATGGAGAATGTTA

Network for GWHGAAEX015825

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00022.18	Actin	4	385	1.40E-109

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17260	ACTR2, ARP2	Autophagy - yeast	map04138
K17260	ACTR2, ARP2	Tight junction	map04530

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	92.620
SRP064423	SRR2545915	Juvenile tuber	93.510
SRP108465	SRR5643513	five period of Gastrodia elata	45.320
	SRR5643514	five period of Gastrodia elata	43.830
	SRR5643515	five period of Gastrodia elata	46.000
	SRR5643524	five period of Gastrodia elata	43.910
	SRR5643525	five period of Gastrodia elata	32.670
	SRR5643528	five period of Gastrodia elata	28.840
	SRR5643658	five period of Gastrodia elata	33.230
	SRR5643659	five period of Gastrodia elata	42.870
	SRR5643660	five period of Gastrodia elata	53.600
	SRR5643661	five period of Gastrodia elata	44.760
	SRR5643662	five period of Gastrodia elata	38.950
	SRR5643663	five period of Gastrodia elata	46.480
	SRR5643664	five period of Gastrodia elata	46.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	55.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	64.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	65.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	72.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	57.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.400
SRP279888	Gastro	Gastrodia elata tuber	80.65
	Juven	Juvenile tuber	74.65
	Mother_Gastro	Mother tuber of Gastrodia elata	53.39
	Mother_Juven	Mother tuber of Juvenile	71.61