Gene detail

Detail information of GWHGAAEX015833/evm.TU.scaffold_7.305

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1755	2.00E-64	Profilin
nr	gi\|643734006\|gb\|KDP40849.1\|	3.23E-75	hypothetical protein JCGZ_24848 [Jatropha curcas]
Swissprot	tr\|Q9M7M9\|PROF4_HEVBR	3.00E-77	Profilin-4
trEMBL	tr\|A0A067L9R6\|A0A067L9R6_JATCU	1.00E-75	Profilin {ECO:0000256\|RuleBase:RU003909}
TAIR	AT5G56600	2.00E-64	profilin 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	11928637	11931969	+

Transcript Sequence
>GWHTAAEX015833 GAAAATAAAAAATTAAAAGTGCAACTCATTTAATGTTGTTCTAAGTTATTCAACATTATTGTGATGATATTTATAACAAAAATGCTCACATTTAACACCTTTGGGAGAAAATCGCTTTGCCTTACCCTGGAACCCACGGGATCTCCGTCACATATCATCGCTGCGAGAAGCATTCCCCCAATTGTCTTCCACCACACCGGGCAGCTTCACGCTATGTGCCTCTGACGCGTGCTCTTGGAGGCTTAATGAACTAGGTGGGGACGAGAGCGGGCACGCGTCGTCTCTGGCCTCCCACACAAAATTGAGATGCTAAGAACAGAGATTTCGGACTCATAAAAGTTGTGTGGGACGCCGATGGAGTCTACGCAGAGCTGCATAAGGAGAAGGATGAGGTGGATTCGAAGGGATGCGGCGTCGTCTTGTATAGCTTTTATGAGGTTGAGCCCGATTATGCGGATTACTACCGAGAGGAGATGGGCACAAGGGTGGGAACTGTTGGCCGAGTTTTTACAAGTTCCATTAAAGATGGCACAGACAAGTGCGGGGAGCATTTAACCCCTGTTGCCGATAGATGTTTGGAATTGCTCGACGAAAAGGAGATTGGCTTGGTGGCGTGCGTGTGCTTTTGAAGCGGGGGCAGCTTTTTTACCTCGCCGCAGATGAGATAAAAGAAGTGGACATTCGTTTGTTAGGGTTGAAGGAGTCGACATCTGTTTGATAAATTATTTTATATTTGGCTCACAATGAAAAGTGTTGATCCCTATATTGAAGGTGGAACAAAAGGCTTTTGATGGTTAAGATTAATCGGGCGGTTAAGCTTGGAAGATCCTTCCCCGTAAACCCCTGTAATGGACCGAACAGCCCTCGCTGCAAGCGGCTATAAAAGGCGCTAACCTGCGGAGAGAAAAAAAAAAACGGTGGGAGGTGCGCGAGCCTTGGAGAGACGGAGAGGAACAAGTTGAAAAAGGGCTAAAATGTCGTGGCAAACCTACGTCGATGAGAACTTGATGTGCGATATTGATGGCAGTCGGCTTGTTGCGGCGGCGATCATGGACCACGATGGCAGCATTTGGGCTCAGAGCTCGTCGTTTCCTCAGTTCAAGCTTGACGAGATCTCTGCCATAATGAATGAATTCAATGAAACGGGAACGCTTGCGCCCACAGGTCTGCATCTCGGGGGTGAGAAATACATGCTTATACAGGGAGAAGAAGGAGCTGTGATTCGTGGAAAGAAGGTATCAGGAGGCATCACTATTAAAAAAACAAGCCAAGCTCTGATAATTGGCATCTACGATGAGAAGATGACACCTGGGCAGTGCAACATGATCGTGGAAAGATTGGGTGACTACATCATCGAGCAAGGCCTGTAGCTCTTGTGTTGATCCCCCATGACACAGTAACTTGACTGTGATGATCTTTGTTTAAGCCCTATATCGTTTAATTCCCTTGTATTGGTCATTTCTTTTCCGTCCTAATGTTGGATTACTAGCAATGCATGTGCTTTTTCTGTATCTTTTTGGACGTGTTGATACACGTTTAGAGCTTTTGAAGTGCGTGATCCTCCATGGCTTTTAATGTTGAAACTCACATGTTGTTGGTTCCAAAAGCTTTATTGAATGAAAACTTCACTGAGCAGCTTAGACTGATTCAACG

Network for GWHGAAEX015833

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module13

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00235.18	Profilin	1	130	1.50E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05759	PFN	Rap1 signaling pathway	map04015
		MAPK signaling pathway - fly	map04013
		Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name
GO:0003779	Molecular Function	actin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.890
SRP064423	SRR2545915	Juvenile tuber	1.440
SRP108465	SRR5643513	five period of Gastrodia elata	2.250
	SRR5643514	five period of Gastrodia elata	2.700
	SRR5643515	five period of Gastrodia elata	2.280
	SRR5643524	five period of Gastrodia elata	2.440
	SRR5643525	five period of Gastrodia elata	2.600
	SRR5643528	five period of Gastrodia elata	4.740
	SRR5643658	five period of Gastrodia elata	2.750
	SRR5643659	five period of Gastrodia elata	3.600
	SRR5643660	five period of Gastrodia elata	3.530
	SRR5643661	five period of Gastrodia elata	4.080
	SRR5643662	five period of Gastrodia elata	4.660
	SRR5643663	five period of Gastrodia elata	4.340
	SRR5643664	five period of Gastrodia elata	12.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.430
SRP279888	Gastro	Gastrodia elata tuber	3.48
	Juven	Juvenile tuber	1.79
	Mother_Gastro	Mother tuber of Gastrodia elata	2.41
	Mother_Juven	Mother tuber of Juvenile	1.31