Detail information of GWHGAAEX015836/evm.TU.scaffold_7.309


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|16801003|ref|NP_471271.1|4.00E-41hypothetical protein lin1937 [Listeria innocua Clip11262]
KOGKOG30822.00E-96Methionyl-tRNA formyltransferase
nrgi|695076278|ref|XP_009385421.1|2.86E-102PREDICTED: methionyl-tRNA formyltransferase, mitochondrial [Musa acuminata subsp. malaccensis]
Swissprottr|F4JP46|PURU2_ARATH7.00E-08Formyltetrahydrofolate deformylase 2, mitochondrial (Precursor)
trEMBLtr|A0A067F728|A0A067F728_CITSI1.00E-100Uncharacterized protein {ECO:0000313|EMBL:KDO63133.1} (Fragment)
TAIRAT1G665202.00E-96formyltransferase, putative

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000051208666812133331+
Transcript Sequence

Network for GWHGAAEX015836

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00551.18Formyl_trans_N61776.30E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00604MTFMT, fmt One carbon pool by folate map00670
Aminoacyl-tRNA biosynthesismap00970

Gene Ontology

GO term OntologyName
GO:0009058Biological Processbiosynthetic process
GO:0016742Molecular Functionhydroxymethyl-, formyl- and related transferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.900
SRR2545915Juvenile tuber2.760
SRP108465SRR5643513five period of Gastrodia elata2.230
SRR5643514five period of Gastrodia elata2.470
SRR5643515five period of Gastrodia elata2.490
SRR5643524five period of Gastrodia elata2.810
SRR5643525five period of Gastrodia elata3.970
SRR5643528five period of Gastrodia elata4.680
SRR5643658five period of Gastrodia elata4.670
SRR5643659five period of Gastrodia elata1.930
SRR5643660five period of Gastrodia elata1.590
SRR5643661five period of Gastrodia elata1.880
SRR5643662five period of Gastrodia elata1.600
SRR5643663five period of Gastrodia elata1.010
SRR5643664five period of Gastrodia elata1.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.830
SRR6049655Rhizomagastrodiae_C368-T10_good_13.860
SRR6049656Rhizomagastrodiae_C368-T07_good_13.980
SRR6049657Rhizomagastrodiae_C368-T07_good_13.720
SRR6049658Rhizomagastrodiae_C368-T04_good_12.810
SRR6049659Rhizomagastrodiae_C368-T04_good_14.730
SRR6049660Rhizomagastrodiae_C368-T01_good_12.940
SRR6049661Rhizomagastrodiae_C368-T04_good_14.040
SRR6049662Rhizomagastrodiae_C368-T01_good_14.120
SRR6049663Rhizomagastrodiae_C368-T01_good_13.090
SRR6049664Rhizomagastrodiae_C368-T10_good_13.450
SRR6049665Rhizomagastrodiae_C368-T10_good_13.450
SRP279888GastroGastrodia elata tuber 2.28
JuvenJuvenile tuber2.05
Mother_GastroMother tuber of Gastrodia elata 1.67
Mother_JuvenMother tuber of Juvenile 2.77