Detail information of GWHGAAEX015848/evm.TU.scaffold_70.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502234|ref|YP_001957951.1| | 3.00E-12 | hypothetical protein Aasi_0851 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 0 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|695058667|ref|XP_009417655.1| | 0 | PREDICTED: U-box domain-containing protein 10 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9C9A6|PUB10_ARATH | 0 | U-box domain-containing protein 10 |
| trEMBL | tr|B6SVE7|B6SVE7_MAIZE | 0 | Spotted leaf protein 11 {ECO:0000313|EMBL:ACG28830.1} |
| TAIR | AT1G71020 | 0 | ARM repeat superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000069 | 1392592 | 1398236 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015848
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 259 | 330 | 5.60E-19 |
| PF00514.22 | Arm | 388 | 426 | 4.80E-08 |
| PF00514.22 | Arm | 470 | 509 | 7.60E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.780 |
| SRR2545915 | Juvenile tuber | 7.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.840 |
| SRR5643514 | five period of Gastrodia elata | 5.120 | |
| SRR5643515 | five period of Gastrodia elata | 5.250 | |
| SRR5643524 | five period of Gastrodia elata | 4.850 | |
| SRR5643525 | five period of Gastrodia elata | 2.880 | |
| SRR5643528 | five period of Gastrodia elata | 2.380 | |
| SRR5643658 | five period of Gastrodia elata | 1.470 | |
| SRR5643659 | five period of Gastrodia elata | 6.820 | |
| SRR5643660 | five period of Gastrodia elata | 5.470 | |
| SRR5643661 | five period of Gastrodia elata | 5.220 | |
| SRR5643662 | five period of Gastrodia elata | 3.920 | |
| SRR5643663 | five period of Gastrodia elata | 3.530 | |
| SRR5643664 | five period of Gastrodia elata | 4.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.11 |
| Juven | Juvenile tuber | 5.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.35 | |
| Mother_Juven | Mother tuber of Juvenile | 5.77 |