Detail information of GWHGAAEX015851/evm.TU.scaffold_70.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|32472722|ref|NP_865716.1| | 1.00E-131 | hypothetical protein RB3773 [Rhodopirellula baltica SH 1] |
| KOG | KOG0409 | 0 | Predicted dehydrogenase |
| nr | gi|743823675|ref|XP_010932591.1| | 0 | PREDICTED: uncharacterized protein LOC105053205 [Elaeis guineensis] |
| Swissprot | tr|Q9SUC0|3HIDH_ARATH | 2.00E-28 | Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial (Precursor) |
| trEMBL | tr|Q652S1|Q652S1_ORYSJ | 0 | cDNA clone:J013116E07, full insert sequence {ECO:0000313|EMBL:BAG90601.1} |
| TAIR | AT1G18270_1 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000069 | 1747697 | 1854518 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015851
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03446.14 | NAD_binding_2 | 7 | 164 | 4.20E-13 |
| PF14833.5 | NAD_binding_11 | 171 | 269 | 1.10E-11 |
| PF03446.14 | NAD_binding_2 | 324 | 482 | 6.40E-35 |
| PF14833.5 | NAD_binding_11 | 489 | 609 | 6.00E-31 |
| PF07005.10 | DUF1537 | 657 | 894 | 3.10E-60 |
| PF17042.4 | DUF1357_C | 919 | 1083 | 4.20E-38 |
| PF01116.19 | F_bP_aldolase | 1097 | 1371 | 5.80E-88 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0016832 | Molecular Function | aldehyde-lyase activity |
| GO:0051287 | Molecular Function | NAD binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0050661 | Molecular Function | NADP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 39.890 |
| SRR2545915 | Juvenile tuber | 36.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 48.290 |
| SRR5643514 | five period of Gastrodia elata | 62.900 | |
| SRR5643515 | five period of Gastrodia elata | 47.590 | |
| SRR5643524 | five period of Gastrodia elata | 57.740 | |
| SRR5643525 | five period of Gastrodia elata | 23.610 | |
| SRR5643528 | five period of Gastrodia elata | 14.940 | |
| SRR5643658 | five period of Gastrodia elata | 19.240 | |
| SRR5643659 | five period of Gastrodia elata | 28.890 | |
| SRR5643660 | five period of Gastrodia elata | 26.460 | |
| SRR5643661 | five period of Gastrodia elata | 20.910 | |
| SRR5643662 | five period of Gastrodia elata | 16.750 | |
| SRR5643663 | five period of Gastrodia elata | 22.110 | |
| SRR5643664 | five period of Gastrodia elata | 19.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 44.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 46.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 46.190 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 46.190 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.88 |
| Juven | Juvenile tuber | 48.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.33 | |
| Mother_Juven | Mother tuber of Juvenile | 33.77 |