Detail information of GWHGAAEX015863/evm.TU.scaffold_70.44
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|118582016|ref|YP_903266.1| | 9.00E-31 | 3'-5' exonuclease [Pelobacter propionicus DSM 2379] |
| KOG | KOG2206 | 0 | Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) |
| nr | gi|743823952|ref|XP_010932653.1| | 0 | PREDICTED: exosome component 10 isoform X2 [Elaeis guineensis] |
| trEMBL | tr|M0TL60|M0TL60_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P27240_001} |
| TAIR | AT5G35910 | 0 | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000069 | 2277496 | 2293163 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015863
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08066.11 | PMC2NT | 35 | 115 | 2.70E-07 |
| PF01612.19 | DNA_pol_A_exo1 | 253 | 419 | 6.60E-40 |
| PF00570.22 | HRDC | 470 | 529 | 6.50E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12591 | RRP6, EXOSC10 | RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0044237 | Biological Process | cellular metabolic process |
| GO:0006139 | Biological Process | nucleobase-containing compound metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0008408 | Molecular Function | 3'-5' exonuclease activity |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0000176 | Cellular Component | nuclear exosome (RNase complex) |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.710 |
| SRR2545915 | Juvenile tuber | 29.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.600 |
| SRR5643514 | five period of Gastrodia elata | 35.280 | |
| SRR5643515 | five period of Gastrodia elata | 37.540 | |
| SRR5643524 | five period of Gastrodia elata | 33.220 | |
| SRR5643525 | five period of Gastrodia elata | 33.600 | |
| SRR5643528 | five period of Gastrodia elata | 37.030 | |
| SRR5643658 | five period of Gastrodia elata | 33.520 | |
| SRR5643659 | five period of Gastrodia elata | 39.010 | |
| SRR5643660 | five period of Gastrodia elata | 38.620 | |
| SRR5643661 | five period of Gastrodia elata | 36.620 | |
| SRR5643662 | five period of Gastrodia elata | 38.360 | |
| SRR5643663 | five period of Gastrodia elata | 35.630 | |
| SRR5643664 | five period of Gastrodia elata | 31.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 37.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 43.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 43.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 43.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 39.30 |
| Juven | Juvenile tuber | 40.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.41 | |
| Mother_Juven | Mother tuber of Juvenile | 68.84 |