Detail information of GWHGAAEX015866/evm.TU.scaffold_70.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|20807851|ref|NP_623022.1| | 5.00E-52 | undecaprenyl pyrophosphate synthase [Thermoanaerobacter tengcongensis MB4] |
| KOG | KOG1602 | 2.00E-92 | Cis-prenyltransferase |
| nr | gi|672143138|ref|XP_008795438.1| | 2.75E-133 | PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Phoenix dactylifera] |
| Swissprot | tr|Q8S2T1|DDPS6_ARATH | 4.00E-95 | Dehydrodolichyl diphosphate synthase 6 |
| trEMBL | tr|I1PZV6|I1PZV6_ORYGL | 6.00E-119 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA06G0041900.1} |
| TAIR | AT2G17570 | 2.00E-92 | Undecaprenyl pyrophosphate synthetase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000069 | 2340138 | 2341007 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015866
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01255.18 | Prenyltransf | 32 | 266 | 1.90E-69 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11778 | DHDDS, RER2, SRT1 | Biosynthesis of secondary metabolites | map01110 |
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016765 | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 43.620 |
| SRR2545915 | Juvenile tuber | 39.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.710 |
| SRR5643514 | five period of Gastrodia elata | 34.250 | |
| SRR5643515 | five period of Gastrodia elata | 25.680 | |
| SRR5643524 | five period of Gastrodia elata | 35.270 | |
| SRR5643525 | five period of Gastrodia elata | 21.100 | |
| SRR5643528 | five period of Gastrodia elata | 26.920 | |
| SRR5643658 | five period of Gastrodia elata | 26.720 | |
| SRR5643659 | five period of Gastrodia elata | 18.660 | |
| SRR5643660 | five period of Gastrodia elata | 22.240 | |
| SRR5643661 | five period of Gastrodia elata | 18.480 | |
| SRR5643662 | five period of Gastrodia elata | 21.090 | |
| SRR5643663 | five period of Gastrodia elata | 22.750 | |
| SRR5643664 | five period of Gastrodia elata | 21.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 40.93 |
| Juven | Juvenile tuber | 57.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 51.45 | |
| Mother_Juven | Mother tuber of Juvenile | 93.31 |