Detail information of GWHGAAEX015874/evm.TU.scaffold_70.56


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743824881|ref|XP_010932893.1|1.62E-109PREDICTED: DNA repair protein XRCC4-like [Elaeis guineensis]
Swissprottr|Q682V0|XRCC4_ARATH6.00E-89DNA repair protein XRCC4
trEMBLtr|M0SMY2|M0SMY2_MUSAM3.00E-108Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P11170_001}
TAIRAT3G231002.00E-88homolog of human DNA ligase iv-binding protein XRCC4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006925620792584670-
Transcript Sequence

Network for GWHGAAEX015874

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06632.11XRCC4312368.90E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10886XRCC4 Non-homologous end-joining map03450

Gene Ontology

GO term OntologyName
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0003677Molecular FunctionDNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.400
SRR2545915Juvenile tuber6.550
SRP108465SRR5643513five period of Gastrodia elata7.050
SRR5643514five period of Gastrodia elata7.850
SRR5643515five period of Gastrodia elata6.760
SRR5643524five period of Gastrodia elata8.720
SRR5643525five period of Gastrodia elata8.470
SRR5643528five period of Gastrodia elata11.940
SRR5643658five period of Gastrodia elata6.260
SRR5643659five period of Gastrodia elata8.390
SRR5643660five period of Gastrodia elata7.730
SRR5643661five period of Gastrodia elata6.620
SRR5643662five period of Gastrodia elata7.810
SRR5643663five period of Gastrodia elata8.070
SRR5643664five period of Gastrodia elata7.220
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.910
SRR6049655Rhizomagastrodiae_C368-T10_good_16.760
SRR6049656Rhizomagastrodiae_C368-T07_good_110.240
SRR6049657Rhizomagastrodiae_C368-T07_good_17.000
SRR6049658Rhizomagastrodiae_C368-T04_good_18.900
SRR6049659Rhizomagastrodiae_C368-T04_good_19.040
SRR6049660Rhizomagastrodiae_C368-T01_good_18.860
SRR6049661Rhizomagastrodiae_C368-T04_good_19.970
SRR6049662Rhizomagastrodiae_C368-T01_good_114.420
SRR6049663Rhizomagastrodiae_C368-T01_good_111.960
SRR6049664Rhizomagastrodiae_C368-T10_good_114.970
SRR6049665Rhizomagastrodiae_C368-T10_good_114.970
SRP279888GastroGastrodia elata tuber 10.44
JuvenJuvenile tuber6.66
Mother_GastroMother tuber of Gastrodia elata 12.48
Mother_JuvenMother tuber of Juvenile 10.38