Gene detail

Detail information of GWHGAAEX015883/evm.TU.scaffold_70.66

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0988	RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference
nr	gi\|743785689\|ref\|XP_010921974.1\|	PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Elaeis guineensis]
Swissprot	tr\|Q8LHH9\|SHL2_ORYSJ	Probable RNA-dependent RNA polymerase SHL2
trEMBL	tr\|A0A067L2C2\|A0A067L2C2_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP38635.1}
TAIR	AT3G49500	RNA-dependent RNA polymerase 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000069	3040001	3059071	+

Transcript Sequence
>GWHTAAEX015883 ATGGGCTCCCTAAGCGGTGCCGCCAGGAACCCTAGAGACGACTTCGTGGTGACCCAAGTGAGCTTCGGAGGGTTCAGCAACTCCGTCGACGCCAAGAAGCTCACCGATTTTCTCGAACTCAACGCTGGAGTAATTTGGCGTTGCCGTGTTAAGAAGACATGGACTCCGCCCGATTTCTTCCCCAACTTCAATTCCCTGGCCACGAATCGCAAAAAATCTTTTGCCGATGAATCCGTTGCCAAGGTCATCATCCCTCACGCATTCGTTCACTTCGCTCACCCCGACGCTGCAAAGCGCGCCATCGCTGCTGCAGGCCGATCGGAACTTATTCTCGACGGTTGCGTCCTCAAAGTTAACTCCGGCACCGAGAGCTCTCGCTTTGCGCAGCAAAGGCGAAACACCGATCCTTTCAAGTTTTCCTCCGTCAGTATCGAAATCGGCACGCTTTTCTCCCGCGACGAATTTTGGCTCACTTGGAAATGTCCTTCGGGCGAGTTCATCGTCGATCCGTTTGAAGGTTGCTGTCAGATGCTGTTCTCTAAAGAGTTGGCATTCTCGCGGAAAGACTCGAATGAGACGTTGTTGATCCAATGCGATTTTAAGGTGCAGTTTCTTATTAGGAATTTGGATGATGTGAAGGTTTGGACGGACGAGGCGCCGCTTGTGCTCCTTCTCCATTTCTCATCTGCCCCGTTTCTGTATTACCGAACCGCTGATGATGATATATATGAATCAGTTCCATTCAGCCTCTTGGATGACGAAGATCCGTGGATTCGAACCACTGATTTTACTGATAGCGGGGCCATTGGCAGATGCAACGTGTATCGGATTTTGCTTTCTCCTCGGTTTGGGCCAAAGCTCGAGAGGGTGTTGGCTTACTTGAGGAATCACAGAATCTCGGAGACTCGGCCAATGGGGCCTCTTCATGTACGCGAGGAGCCGGAGTTTGGGGTTCCCATGCCTTACCCCTTCTTGTGTATTCACTCGATGCAAGGTATCAGTTTTAGCACACTGTTCATGGTTAATGCGGTTTTGCACAAGGGGATCATCAACCAGCACCAACTTTCTAACAAGTTCTTCAATTTGCTGAGGAGCAATAGTGATTCTTTAAATGATGCAGCTTTGCGGCATATTTGGGCTTATAAGCGCGCCATCTTTGATGCTTACCAAAGGCTAAAACTTGTGCAGAACTGGCTATCAAGAAACCCGAAGATTGCTAAGGGATCAAGGATTTGTGATGGTACTGTAGAGATGCGAAGGCTGATCATTACTCCAACAAAAGCACATTGTTTACCCCCTGAGGTGGAGGTGTCTAATCGTATTCTTAGGCATTTCAGGGATGTGGAAGATAGATTTTTGAGGGTTACTTTTGCAGATGAAGAAATGCAGCAACTGAGTTCCAGTGTCGTGAACTACTATGTTGCTCCAATTGTGAAGGAGATTACTTCAATTAGATACCTACAGAAAACTACTGTTTTTAGGAGGATCAAGATGCTATTGAAAGATGGCATAGACTTGTGTGGAAGGAGGTACTCCTTTCTGGCATTCTCAACAAATCAATTGAGGGATCAGTCGGCTTGGTTCTTTGCAGATGATAGGAAAATAACTGCTGAATCTATCAGAAAATGGATGGGTAGATTCAAAAGGAAGAATGTTGCAAAGTGTGCAGCTCGAATGGGACAGTGCTTCTCCTCGACATATGCTACAGTTAAGGTGCTGCCCAATGAAGCTGATTTTGACCTTGAGGAAATTGAGAGGAATGGGTATTGCTTTTCTGATGGGATTGGGAAGATCACGCCTGAGCTTGGAAAGAATGTTTCTGAGATATTGCATTTGACTGACAATCCACCGTCTGCTTATCAAATACGGTATGCTGGATGCAAGGGTGTAGTGGCTGTTTGGCCTGGGAAGGATGATGGAATTTGTTTGTCGCTTAGACCAAGCATGAATAAATTTGAATCCAACCACACCGTGTTAGAGATTGTGTCTTGGACCCGATTTCAACCTGGGTTTTTAAACCGACAGAACGTGACGCTGCTTTCTTCTTTGGGTGTTCCTGATACTGTGTTTTCAAGTATGCAGGGGGAAATGATTTCTAAGCTGGATAATATACTTGTGGACACTAATGCTGCGCTTGATGTTCTAATCACTTCTTGTCTTGACCAAGGAAACACTGCTGCTATGATGCTGGCTGCTGGTTTTATACCTCAAACAGAGCCTCATCTAAAAGACATGCTGTTGTGTGTCAGAGCTGCACAGTTACGGGATCTTTTCTCAAAGGCCAGAATATTTGTTCGAAATGGCCGGTGGTTGATGGGCTGTTTGGATGAATTAGGGATTCTAGAACATGGTCAGTGCTTTATTCAGACATCCACTCCCTCATTGGAGAACTGCTTCTCGAAGCATGGGTCTAGATTTTTGGCAACAAAGAAAGAAAAGAAAATTATTTTGGGTACTGTTGCAATGGCAAAGAACCCGTGTCTTCACCCTGGGGATGTTCGGATTCTCGAAGCAGTTGACATACCTGAACTGCATCACCTTGTTGATTGCTTGGTGTTTCCGCAGAAGGGTGAGCGACCTCATGCTAATGAGGCATCTGGTAGCGATCTTGATGGTGATCTTTACTTTGTTACCTGGGAACCTAAGCTGATACCTCCAAACAAAAAGAGCTGGCCTCCATTGGACTATAAAGCAGCAGAAGAAATGCTTCAACCACGTGATGTCAACCATCTGGACATCATTGATTTCTTTCTGAAGAACATGGTGAGCGAGGATCTTGGGAAAATCTGCAACGCACACGTGGTCCACGCGGACCTCAGCGAGCATGGAGCCATGGATGAAAAATGCATCCAGTTAGCAGAGCTGGCTGCGAAGGCGGTTGACCTGCCCAAAACTGGGCAACAGGTGAGCATGCCTCCGTCCCTCAGGCCCAAAGTGTACCCTGACTTCATGGAGAAGCAGGAGCACCTGTCCTACAAGTCTGAGAAGATCCTCGGGTGCCTTTACCGCTCCATAAGATACGTCTTCAATGAGAGCTCTCTGCATCCGGAGCTCCTGCCCAATTACGAGAGCATCCCCTATGACAGGGATCTTGAAGTCCCCGGGGCCTCGGATTACCTTGAGTCTGCCTGGGCAAGCAAATGCCTCTACGATTCCCACGTCAACGCCCTGCTGGGGCAGTACGGAATAAAGGCCGAGGCAGAGGTTGTAGTAGGGCAGATCTTGTCACTGCCCAAGGTCAACAGCAGGAAGCAGGGGGATCTGAAGGAGAAGATAAAGAGTGCATACATGGCCCTTCATAGGGAATTCCGCCACGTTTTCGAGACCCTGGAAGGGGACGATGCACAGCTTTCTATGGAGGAGAAGGACTTGTTGTTCCGGCGAAAAGCAGCAGCATGGTACCAAGTGACATATCATCCAAAGTGGGTGAAGAGATCTACGGAGAGGAGGGGGCCCGACGGCGGTGAAGTCCCTCCACCGCGCCTGAGCTTTGCGTGGATTGCTGCTGATTACCTTTCTGGATTGAAGGCCGACCAACTGTCGAGAATCACTTGAAGAATTCATTGCATGATTTACATGATTTAATAGCAAAGGCCACTCTGCCATTTTACTCGACAATTGTGAACTGATTATGTATTTTAAGTTATAGATTTCGTTGATATTGTTTTGCTAATGCTTGTAGTGTACCCTTGCTTGTGGTGTATCCTTATTGATGAACTTTTGCTTGTTCTTGCTCCTGCTTTCTTAATACTAATCATTAGGTTAATGCATATTAACTTTGATTTCTTGGAAAGCAGGAATTAAAGAGAACTAATACTTGCTTTCTTCCTTTCTTCATCCAAATCAAAACCAAAACTGGTCATCCGTTCACCAGAAATCATCACAGGAGCATTCCCCGTTTCGAAAATGATGGAAGCGGCTTCGATCCCTAACAATGATTTCTCTATCCCAAAGCCTGGAAATCATCTTTATCGTCAAATGACAATCATCGCAAACCCGCAGGTTCTTAATGACGTGAATCGGCAGGCTTGGCCCCAACCTCATGATCCCGAAAGCAATGGCTATCCTTTCACTGTGTCCAAAGAGAGCCTGCTCCGTCTCCTCATCATCAACATCCAGTGAAACTTGAGACGTGATTGGTGCATAGCCAGATGCCTTCAGCCTCTTCATTATCTCTCCCATCGTAGCCCGGATCTCCATTACATCTGGGTGCGAACGATCGCCGGCGATAAACTTGTGAGACCGCCCACGTACTGCGATGGAGCTGAAAGCTGCAATCTTCTTCACCCCTCTCTCCTCCATCAAGCTTCTAACCTTGGAAGCATCTTCCCATCTCCCAGCATCTATGTAAGCGTTGTACAGCTGAACATATCCAACATCTTTAACCGGATCCAAGACGATGAGCTCTCTTGCTGACCATTCGGCCAATTCCACGTTCCTGTGGGTTCTGCACGATCTCAAGAGAGAAGCCCATATAACATCATTGGGCTGCACTTTCATGCTTCTTATAACCTTTTCGGCTTCATCCAAATGCCCTAGGCGGCCGAGTAGATCAACCATGCAGCCATAATGCTCGATTTCCGGCTCCAATCCATATAGCACCCGCATCTCCCTAAAATGCCGGCGGCCTTCGTCGGCGAGGCCCGAGTGGCTGCACGCATTCAGCACACCTACGTAGGCGACTGTGTTTGGCCTGATGCCTTCATTCCTCATCATAGAGAAGTGCTCCAGCGCAAGCTCGCCCATCCCGTTCATGGCAAAACCAGAGATCAAGATTGTCCAGGCCATCACATCCTTGCGGGGCATTCTGTCAAACACTTTGATCGCTTCCTCCATCTTCCCGCACTTCGCATACATGTCGACCAGACCGGTCTCAAGGAAGATGTCGGATTCGGCAAGCCCGATATTGCTGTAAGAATGTAGGATCTTACCTTTGTCCAGCGCACCGGTGCTCGCACAAACCGAGAGCAAGCCTACGATCGTGTATTTGTCGGGCAGGAGGCCGGAGCACAGCAGATCATTGAATAAAAGCAGGGCTTCCTCAATCATGCTGCTCTGAATATAGCCAGTGATCATCGAGTTAAATGTGATCAGATTGCGGGAGCAGGAGCTGATCTGATCAAAAAGGGATCGAGCTTCGTCCAAATTGCCCGTTTTGCAGTATCCATCAATGATTGCATTCCACGCCGGGAGAATCCCACGAGCCATGGTGTCGAAGACCGAACGAGCCTGCTTCATGTCGCCGCATTTTGCGTACATGTCAACAAGAGCCACAATGAGATTCTGCTTCAAGGCGGCAACATCCTTCTCCTCGAAAAGCCGGTGAATCCATCTTCCGGTTTCAAGATCCCGGCTTCGAGCGCAGGCAATGAGCGCAGAGACGAGCGCGACATCATCGGGCGCAACCCCTTCTCCGAGCATCGTTCTAAATATCTCGATAGCCTCTGCGTGCTGTCCTGCTGTAGAATACTCCTTGATCATCACTGTCCACGAGACAACATTTCTCTCAGGCATTTCGTCGAACACCTTCCTCGCGCCATCGAGCAACCCGGATTTTGCCAGTCCGGACACCATCGTGGTCCACATCAGAACATCTCTCCTGACGACGCAATCGAACACTCTTCTAGCCTCATCAATCTGGCAAAACTCAACGTACATTTGAATCAAGGAGGTCGGAACATATCTATCGGAATCAGAGAAGAGCCTGATGAATTGGCCGTGGGTAGAGACGCCCTGCGGAACCAAGTGAGCGAGGCTGCAAGATTTGAAGAGAAGTTGAAAGGTGAGGGAATCCGGCATCACTCCTTTCCTTCGCATTTGGGTAAAAACGTGGATGGACTGCTCGGGGAATTGATGAAGGCAACAAGCCTTCAGGACTTGGTTGCATTGGAAGGCGGAGGGGTTTTGGAGGTCGGAGTAGAGCCGGATAGCGTAGGAAAGATCGCTGCTTCTGGAGTTTGCGAAGGATCTCAGCAGAAGAGTTGCCGGCTGCGGCAAGAGGAGAGCGCCGGAAACGATCACTTGGGCGTGAACCTTGGTGGTTGCTTTCAGGGACCAACAAGAAGATATCTGCCATGGAAACTGCAACCAGGGGCTCATTCTATGAGGCAGGGTATGAACCATTATATTTCAATGATTCCACCAACCAGAATAACCCCTCATACAAACTAGGTAATATTAACACAATATTTTCAGCCTAACAGTATGATTGAAGCAACTGCCAGAATTCTTTTAAGAATTACAAATGATTAAAATCATAATTTAGAAACTTGTATA

Network for GWHGAAEX015883

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05183.11	RdRP	423	1005	2.70E-180

Protein Sequence

>GWHPAAEX015883
MGSLSGAARNPRDDFVVTQVSFGGFSNSVDAKKLTDFLELNAGVIWRCRVKKTWTPPDFFPNFNSLATNRKKSFADESVAKVIIPHAFVHFAHPDAAKRAIAAAGRSELILDGCVLKVNSGTESSRFAQQRRNTDPFKFSSVSIEIGTLFSRDEFWLTWKCPSGEFIVDPFEGCCQMLFSKELAFSRKDSNETLLIQCDFKVQFLIRNLDDVKVWTDEAPLVLLLHFSSAPFLYYRTADDDIYESVPFSLLDDEDPWIRTTDFTDSGAIGRCNVYRILLSPRFGPKLERVLAYLRNHRISETRPMGPLHVREEPEFGVPMPYPFLCIHSMQGISFSTLFMVNAVLHKGIINQHQLSNKFFNLLRSNSDSLNDAALRHIWAYKRAIFDAYQRLKLVQNWLSRNPKIAKGSRICDGTVEMRRLIITPTKAHCLPPEVEVSNRILRHFRDVEDRFLRVTFADEEMQQLSSSVVNYYVAPIVKEITSIRYLQKTTVFRRIKMLLKDGIDLCGRRYSFLAFSTNQLRDQSAWFFADDRKITAESIRKWMGRFKRKNVAKCAARMGQCFSSTYATVKVLPNEADFDLEEIERNGYCFSDGIGKITPELGKNVSEILHLTDNPPSAYQIRYAGCKGVVAVWPGKDDGICLSLRPSMNKFESNHTVLEIVSWTRFQPGFLNRQNVTLLSSLGVPDTVFSSMQGEMISKLDNILVDTNAALDVLITSCLDQGNTAAMMLAAGFIPQTEPHLKDMLLCVRAAQLRDLFSKARIFVRNGRWLMGCLDELGILEHGQCFIQTSTPSLENCFSKHGSRFLATKKEKKIILGTVAMAKNPCLHPGDVRILEAVDIPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWEPKLIPPNKKSWPPLDYKAAEEMLQPRDVNHLDIIDFFLKNMVSEDLGKICNAHVVHADLSEHGAMDEKCIQLAELAAKAVDLPKTGQQVSMPPSLRPKVYPDFMEKQEHLSYKSEKILGCLYRSIRYVFNESSLHPELLPNYESIPYDRDLEVPGASDYLESAWASKCLYDSHVNALLGQYGIKAEAEVVVGQILSLPKVNSRKQGDLKEKIKSAYMALHREFRHVFETLEGDDAQLSMEEKDLLFRRKAAAWYQVTYHPKWVKRSTERRGPDGGEVPPPRLSFAWIAADYLSGLKADQLSRIT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003968	Molecular Function	RNA-directed RNA polymerase activity
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.770
SRP064423	SRR2545915	Juvenile tuber	10.500
SRP108465	SRR5643513	five period of Gastrodia elata	11.830
	SRR5643514	five period of Gastrodia elata	10.510
	SRR5643515	five period of Gastrodia elata	9.680
	SRR5643524	five period of Gastrodia elata	9.050
	SRR5643525	five period of Gastrodia elata	9.170
	SRR5643528	five period of Gastrodia elata	7.200
	SRR5643658	five period of Gastrodia elata	8.750
	SRR5643659	five period of Gastrodia elata	11.970
	SRR5643660	five period of Gastrodia elata	12.020
	SRR5643661	five period of Gastrodia elata	12.590
	SRR5643662	five period of Gastrodia elata	11.700
	SRR5643663	five period of Gastrodia elata	12.290
	SRR5643664	five period of Gastrodia elata	11.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.810
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.150
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.530
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.770
SRP279888	Gastro	Gastrodia elata tuber	9.34
	Juven	Juvenile tuber	12.96
	Mother_Gastro	Mother tuber of Gastrodia elata	6.30
	Mother_Juven	Mother tuber of Juvenile	6.73