Detail information of GWHGAAEX015891/evm.TU.scaffold_70.76
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392373778|ref|YP_003205611.1| | 8.00E-15 | Chalcone and stilbene synthase domain protein [Candidatus Methylomirabilis oxyfera] |
| nr | gi|694445037|ref|XP_009348991.1| | 0 | PREDICTED: 3-ketoacyl-CoA synthase 19-like [Pyrus x bretschneideri] |
| Swissprot | tr|O48780|KCS11_ARATH | 0 | 3-ketoacyl-CoA synthase 11 |
| trEMBL | tr|B9IKT4|B9IKT4_POPTR | 0 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} |
| TAIR | AT2G26640 | 0 | 3-ketoacyl-CoA synthase 11 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000069 | 3287386 | 3289903 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015891
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08392.11 | FAE1_CUT1_RppA | 72 | 361 | 8.10E-135 |
| PF08541.9 | ACP_syn_III_C | 379 | 460 | 3.80E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15397 | KCS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Fatty acid elongation | map00062 | ||
| Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006633 | Biological Process | fatty acid biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.000 |
| SRR2545915 | Juvenile tuber | 13.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.220 |
| SRR5643514 | five period of Gastrodia elata | 27.430 | |
| SRR5643515 | five period of Gastrodia elata | 25.790 | |
| SRR5643524 | five period of Gastrodia elata | 20.750 | |
| SRR5643525 | five period of Gastrodia elata | 15.410 | |
| SRR5643528 | five period of Gastrodia elata | 2.590 | |
| SRR5643658 | five period of Gastrodia elata | 14.870 | |
| SRR5643659 | five period of Gastrodia elata | 2.480 | |
| SRR5643660 | five period of Gastrodia elata | 3.100 | |
| SRR5643661 | five period of Gastrodia elata | 3.200 | |
| SRR5643662 | five period of Gastrodia elata | 7.710 | |
| SRR5643663 | five period of Gastrodia elata | 7.750 | |
| SRR5643664 | five period of Gastrodia elata | 0.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 40.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.61 |
| Juven | Juvenile tuber | 1.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.39 | |
| Mother_Juven | Mother tuber of Juvenile | 6.02 |