Detail information of GWHGAAEX015898/evm.TU.scaffold_70.88
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186686076|ref|YP_001869272.1| | 3.00E-22 | Miro domain-containing protein [Nostoc punctiforme PCC 73102] |
| nr | gi|743774541|ref|XP_010917626.1| | 0 | PREDICTED: uncharacterized protein LOC105042204 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9CAD5|YODA_ARATH | 8.00E-21 | Mitogen-activated protein kinase kinase kinase YODA |
| trEMBL | tr|M0RZR7|M0RZR7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P14090_001} |
| TAIR | AT1G04210 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000069 | 3863622 | 3897328 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015898
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13855.5 | LRR_8 | 203 | 260 | 8.80E-10 |
| PF14381.5 | EDR1 | 526 | 642 | 1.10E-07 |
| PF14381.5 | EDR1 | 684 | 762 | 1.60E-10 |
| PF00069.24 | Pkinase | 838 | 1118 | 1.60E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | TKL-Pl-2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.200 |
| SRR2545915 | Juvenile tuber | 23.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.670 |
| SRR5643514 | five period of Gastrodia elata | 14.290 | |
| SRR5643515 | five period of Gastrodia elata | 14.490 | |
| SRR5643524 | five period of Gastrodia elata | 14.180 | |
| SRR5643525 | five period of Gastrodia elata | 20.180 | |
| SRR5643528 | five period of Gastrodia elata | 17.540 | |
| SRR5643658 | five period of Gastrodia elata | 15.930 | |
| SRR5643659 | five period of Gastrodia elata | 17.550 | |
| SRR5643660 | five period of Gastrodia elata | 18.470 | |
| SRR5643661 | five period of Gastrodia elata | 16.960 | |
| SRR5643662 | five period of Gastrodia elata | 17.730 | |
| SRR5643663 | five period of Gastrodia elata | 18.610 | |
| SRR5643664 | five period of Gastrodia elata | 14.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.860 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.70 |
| Juven | Juvenile tuber | 21.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.70 | |
| Mother_Juven | Mother tuber of Juvenile | 29.65 |