Gene detail

Detail information of GWHGAAEX015899/evm.TU.scaffold_70.89

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672115294\|ref\|XP_008780336.1\|	9.62E-89	PREDICTED: protein TPX2 [Phoenix dactylifera]
Swissprot	tr\|F4I2H7\|TPX2_ARATH	8.00E-18	Protein TPX2
trEMBL	tr\|D7TWC4\|D7TWC4_VITVI	1.00E-70	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34799.3}
TAIR	AT4G22860	2.00E-47	Cell cycle regulated microtubule associated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000069	4118228	4151132	+

Transcript Sequence
>GWHTAAEX015899 CCGGTGAGCTCAGCTTAAATTCAGCGATAATCCCGCTCTCCAAAACGCCTCTAGCGCTCTCTCGGAAACGACCCGTCTCTCCCTGGCAGTTCTCCGGTGACTGTGACTCCATCAAAGTCGCCTTCTAATGCTCGTTTTGCGTATGCGTTGAAGACCCCGTAGCATCGACAATACCATAAAATGACATAAATACCCAAGAGAAAATGAAGGCTTGAATGCCCTTTGGGTTCAGTTGTTCTGCTTTCCGACCACACATTCATAATTCTTTCGCTTTCGCTCTTGCTTTGCTGCAACTTTGTTGTCTTCCGCCTCTCGCGGGCTAATTAATGGCGATTTTAGGGCACTTATGATTTCCATTGGTTGTAGGAAGATTAGAAAACTGAATTCTACAGCGGATTTTTTATTTTTGGTTGCACGCATGCAGTCTTTTTCACTCCAAGAGAGGATTGGAGCTTGAGAAGGCGATGACAGCAGCGATGGAGGAAGTAAATTTGCTCAGCTCGGAGGTTGATTTTGATTACGAGTTCGATGCAATGAGGTACTTTGACTTCGTGAGGGAAGAAACCCTGACGGAGGTTCGGGAGGCCGAGTTCTGGTTCGAGACTGCCGGGAGCTACCCTCCTTCTTCCTTTGAATCAAAAATAGCTTTCAACAAGGATATTTTTGTGGACACTGTCAATACTTTGCCCAAATCTAAATATGCAGAGATGTCTAATTTTCATTCAGATAGAGCAGGTGGTCAAGGTCTCTATGATATAAATAGGATATCTAAAGTTCAAAATTATGTGATCCATAATCCTTATCAAATTGAGAATTTATTTGTATTTGGATCATCTACACGTAGTTCGACATTGATGAAACCTACTGAAAGTCATCTTGCCAAGCAAAATAATCTTCGCCAAGTGAGAAATGTTCAACAATCAGCAAATAGATTGCGAAAGCCACATCTTGAGGAATATGCGGAGAACAATGAAGATCCTTCAGAAAATAGTGTTCAAGCTGCCAAAAGGCAAAAGCTAGAGGGTGGAAATTTACGGAAGGTTATTGCAGAGAAGCAACACATAAATTTGATACACAAGATTCCAGCAAAAAATAACAGAACATCTACTTGCAAACTCAGACTTACCATTCCGAGAGAACCAGACCTACAAACAGCACAAAGGGCTCAAAGAATAAGGATTCTTAGGTCAAATGTTGATATAAAATCTCAAGAAATTAAGAGACAAGTTGCATCAACCATTTCATCTCAATCTCTTTTTAATAGAAACACCATTAAGTCTTCCTCAATACATGACTGTCAGAAAAGCACATCAAAATTACCTGAATTTCAATCAGTAGAGAGGGAAACCAATCACTCGGTTGCTATTTCGTTATCTTTGGATGTAAATGACTGTACTCCCAGTAGACCTACTGAAGGAGTTAAATCAAACTTGAAATATGTTCGATGCCAACCCTCTATTGCTACAATATCTGCCAACAATGAACAGATAAAGCATAAAGATGAAAACATCATTCCCACGTTTACAGCAAGACCACTTAATAAGAAGACTTTGTCTAGCAAAGGGGATATGGGTGTCTTCTGTTGTGTCAAGCAAGAAACAACAAAACATACGGTGTTCAACCTTTCAACAAACAAAAGATGCCAGCCAGATATGGCAACTGAACTGTTTAACAAGCTTTCCCTAAACTCTGATGCACAGCAGTCTCCTGCAAGCTTGACATTGCCTGTATGGCATTTTAATGCACCTGAAAAGGATTTCAAGAGGAATGCAAGTTACATCCCACCTAAAAGAAACAAGGCTAATTATGAAGATCAAGGATGCTCATTAAAGAATGAAGCTTTTAAATGCCACAAATTGGAATCCAATAATTTGAGAAGGCATGCCATGCGATAAAGAAAATTTTTTGGGAGCGCGCTGCTATAAAGTTTTTCCGAGAGAACGTCGGCCAGTGCTTTTGGCCGCTGCATTATAGTGAAATTTTAATCACTATGAAGAATTTATGCGTTATCCTTTTTTTAATTTTATTTTTTGTTTAACCCTTGAGAGAGTAAAGATTACCAAAATTCAGAACTCATTCCGGGGAGGAAAACGTCCCCAGTTCCGTTGCAAAACCATAGATGGATCAAGGACCTGTTGTACAGTTGTGAATCTAGAATCTTTCTCACTAATAAATTTTAGCTTTGGGAGGGTTTCTTAATACACACTTTTGTAATTGAACACCCTTTTATCTTCATATATATAGTATATGCAGCAGCAAGGCGCTCTTACATATTGTGCTCTTCCTACTTGCTTGTTCCTTTTTT

Network for GWHGAAEX015899

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12214.7	TPX2_importin	218	386	5.30E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.120
SRP064423	SRR2545915	Juvenile tuber	4.470
SRP108465	SRR5643513	five period of Gastrodia elata	2.190
	SRR5643514	five period of Gastrodia elata	2.310
	SRR5643515	five period of Gastrodia elata	1.910
	SRR5643524	five period of Gastrodia elata	2.400
	SRR5643525	five period of Gastrodia elata	1.900
	SRR5643528	five period of Gastrodia elata	1.630
	SRR5643658	five period of Gastrodia elata	1.680
	SRR5643659	five period of Gastrodia elata	1.350
	SRR5643660	five period of Gastrodia elata	1.020
	SRR5643661	five period of Gastrodia elata	1.950
	SRR5643662	five period of Gastrodia elata	1.190
	SRR5643663	five period of Gastrodia elata	1.560
	SRR5643664	five period of Gastrodia elata	1.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.860
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.430
SRP279888	Gastro	Gastrodia elata tuber	1.62
	Juven	Juvenile tuber	1.36
	Mother_Gastro	Mother tuber of Gastrodia elata	4.11
	Mother_Juven	Mother tuber of Juvenile	2.49