Detail information of GWHGAAEX015901/evm.TU.scaffold_70.91
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428310948|ref|YP_007121925.1| | 3.00E-24 | Na+ antiporter [Microcoleus sp. PCC 7113] |
| KOG | KOG1965 | 0 | Sodium/hydrogen exchanger protein |
| nr | gi|743784716|ref|XP_010921731.1| | 0 | PREDICTED: sodium/hydrogen exchanger 2-like [Elaeis guineensis] |
| Swissprot | tr|Q56XP4|NHX2_ARATH | 0 | Sodium/hydrogen exchanger 2 |
| trEMBL | tr|M0RTW6|M0RTW6_MUSAM | 0 | Sodium/hydrogen exchanger {ECO:0000256|RuleBase:RU003722} |
| TAIR | AT3G05030 | 0 | sodium hydrogen exchanger 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000069 | 4514389 | 4562300 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015901
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00999.20 | Na_H_Exchanger | 28 | 443 | 2.30E-56 |
| PF15459.5 | RRP14 | 593 | 654 | 5.60E-16 |
| PF04935.11 | SURF6 | 736 | 911 | 2.60E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006814 | Biological Process | sodium ion transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006885 | Biological Process | regulation of pH |
| GO:0006812 | Biological Process | cation transport |
| GO:0015299 | Molecular Function | solute:proton antiporter activity |
| GO:0015385 | Molecular Function | sodium:proton antiporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.380 |
| SRR2545915 | Juvenile tuber | 20.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.760 |
| SRR5643514 | five period of Gastrodia elata | 12.620 | |
| SRR5643515 | five period of Gastrodia elata | 14.430 | |
| SRR5643524 | five period of Gastrodia elata | 14.090 | |
| SRR5643525 | five period of Gastrodia elata | 14.390 | |
| SRR5643528 | five period of Gastrodia elata | 11.970 | |
| SRR5643658 | five period of Gastrodia elata | 12.490 | |
| SRR5643659 | five period of Gastrodia elata | 17.880 | |
| SRR5643660 | five period of Gastrodia elata | 18.350 | |
| SRR5643661 | five period of Gastrodia elata | 19.240 | |
| SRR5643662 | five period of Gastrodia elata | 16.890 | |
| SRR5643663 | five period of Gastrodia elata | 18.330 | |
| SRR5643664 | five period of Gastrodia elata | 16.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.31 |
| Juven | Juvenile tuber | 16.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 30.22 | |
| Mother_Juven | Mother tuber of Juvenile | 27.03 |