Detail information of GWHGAAEX015903/evm.TU.scaffold_70.94
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0845 | 0 | Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116) |
| nr | gi|743769079|ref|XP_010914822.1| | 0 | PREDICTED: nuclear pore complex protein NUP98A isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q8RY25|NU98A_ARATH | 0 | Nuclear pore complex protein NUP98A {ECO:0000303|PubMed:21189294} |
| trEMBL | tr|W1P2F0|W1P2F0_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN02093.1} (Fragment) |
| TAIR | AT1G10390 | 0 | Nucleoporin autopeptidase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000069 | 4659882 | 4681167 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015903
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04096.13 | Nucleoporin2 | 888 | 1028 | 5.70E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14297 | NUP98, ADAR2, NUP116 | RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006913 | Biological Process | nucleocytoplasmic transport |
| GO:0017056 | Molecular Function | structural constituent of nuclear pore |
| GO:0005643 | Cellular Component | nuclear pore |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 45.850 |
| SRR2545915 | Juvenile tuber | 37.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.370 |
| SRR5643514 | five period of Gastrodia elata | 28.250 | |
| SRR5643515 | five period of Gastrodia elata | 26.560 | |
| SRR5643524 | five period of Gastrodia elata | 27.120 | |
| SRR5643525 | five period of Gastrodia elata | 33.830 | |
| SRR5643528 | five period of Gastrodia elata | 40.500 | |
| SRR5643658 | five period of Gastrodia elata | 55.350 | |
| SRR5643659 | five period of Gastrodia elata | 29.610 | |
| SRR5643660 | five period of Gastrodia elata | 35.470 | |
| SRR5643661 | five period of Gastrodia elata | 33.230 | |
| SRR5643662 | five period of Gastrodia elata | 32.360 | |
| SRR5643663 | five period of Gastrodia elata | 31.360 | |
| SRR5643664 | five period of Gastrodia elata | 37.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 48.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 46.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 40.020 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.86 |
| Juven | Juvenile tuber | 68.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 41.19 | |
| Mother_Juven | Mother tuber of Juvenile | 55.47 |