Gene detail

Detail information of GWHGAAEX015910/evm.TU.scaffold_70.101

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2011	Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3
nr	gi\|743768203\|ref\|XP_010914380.1\|	PREDICTED: sister-chromatid cohesion protein 3 [Elaeis guineensis]
Swissprot	tr\|O82265\|SCC3_ARATH	Sister-chromatid cohesion protein 3
trEMBL	tr\|M0TEF5\|M0TEF5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P03650_001}
TAIR	AT2G47980	sister-chromatid cohesion protein 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000069	4728078	4754530	+

Transcript Sequence
>GWHTAAEX015910 TTGAACGACAACATTGTGAACGAACATAGTTCGTTTAGGGTTTGAGCATTCTTTCAAACGATTGACTCTTTATAACGAAACTTTTGTTCTAATTTGATTCTTTAAAACGAAAACTCATCTAATTTAAAAAGAGTAATGAACAAAATAAATTAATTAATTTCTAAATTGCTAGGAGCTTATGAAGCAATCAAGCTCCTTAAATAATATTAATAAAAAAAACATTGAAGCACAAACATTTTCATGTGCTCCTCTGTACAGTGGAAGGCACTCAGCTGAGCTTTACCTTTCTCTACGGAATTGACGGATTCAGGGTTGGGGGAGAGACATGGAGAACGTTGGAGTAACGTCGGAGGCCTCTGCGCGACGCTCGAAAAAGGCTAGGGTATTGGAACCTTCCGATGGCGCGCCTTCCGAGTCGAACGAGAGGAACGACCCAAACTCCGCTGATGTGGATCAGTTGTCTGGTGACGATGGTGACGATGACTGGCTGTTTGACGGGGCTGGAAATCGATCTCCCAAGGCGAGGAGGAAAAGAGGCCCCTCAGCTAAGATTGCCGGGGGCATGGAGGACTGCAGTCTTATCGAGATTATCAAGTGCAATGGAAAGCTTATCCCATACGCTGTTAAAAAATTGATTGAGCAGTATGAAGCAAACCCCAAATCTGCAATGGTGGATATTTTGATGATGCTCTTTGAGGCATGTGGTGCTAAATATCAGTTTCATGTAGACAACATTGATTCGACCGATGTGGATAATGTGGTAGTAAAACTCGTGGAACTTGCAAATTTTGGAGAAATCGAAGATCTCTATACCTCCAAGCGGAAAGAGCTTAAGAACTTTAAAGAAAACATTGCATCATTTTGGGATTCTTTAGTTTTGGAGTGTCAAAATGGGCCATTATTTGATAATATCTTATTCGAGAAATGCATGGATTATGTCATTGCATTGTCATGTACACCTCCAAGAATTTATCGCCATGTGGCAACATTGGTGGGTCTTCAACTTGTTACTTCTTATATAACAGTAGCTAAGATACTGGCAGGCCAGCGTGAAACTACTCAAAGACAGTTGAATGCTGAAAAAAAGAAACGGAGTGATGGACCTCGTGTTGATTCATTGAACAAGCGATTATCCCAAACCCACAAAACGATAAGTGTCATAGAAGAGATGATGAGGAAACTATTTCAAGGGTTATTTATGCACCGATATCGTGATGTTGATTCTGACATACGAGTTTCTTGTATTAAATCACTTGGTATCTGGATCTTGTCATACCCATCATTGTTCTTGCAGGATTTATATTTGAAATATCTAGGTTGGACTTTAAATGACAAAGTTGCTGCTGTACGTAAAACTTCTGTCCAGTCCTTGCAAAACCTTTATGAAGTAGATGATAATGTGCCATCTCTTGGCCTTTTTACTGAAAGATTTTGCAACCGAATGATTGAACTTGCAGATGACATTGATATTTCAGTTGCTGTCTCTGCCATAGGACTTCTTAAGCTTCTTCTGAGACATCAGCTTCTAACAAATGAAGAATTGGGTCCATTATATGATTTGCTCATTGATGAACCTCCCATGATTAGGCGTGCTATAGGTGAACTAGTTTATGATCACTTAATTGCACAGAATGTGAAAGGTTCATCAACAATTTCCAAAGGTGAAGATGATAAAACTTCTGAAGTTCACTTGGGACGAATGCTACAAATACTTGGAGAGTTTCCTGATGACCCAATTCTAAGTGCATACGTCATTGATGATATATGGGATGATATGAAGGCCATGAAAGATTGGAAATGTATGATTTCCATGCTTCTTGAGGAAACTCCTGCAATTGAGATTACTGATATTGATGCTACTAACCTTGTTCGTCTGCTTAATGCTTCTGCCAAAAAGGCAGTTGGAGAGAAGATTGTCCCCTCCACTGACAACCGTAAGCCACATTATACAAAAGCTCAAAAGGAGGCCATAGATAATAGCAGGCAAGAATTAACTACTGCCCTAATGAAGAGCTATCCACAGTTGTTGCAAAAGTATATTGCTGATAAAGAAAAATTACCTTCATTGGTTGAAATTCTTTTGCTTTTGAACCTTGAGCTTTATTCACTTAAAAGAAGAGAGCAGAGTTTCAAGTGTATTTTGGATCTAATTGCCGAAGCTTTTTTCAAACATGGCGGAGAGGATGCCTTAAAATCCTGCATCAAGGCTCTCACATTTTGTTCTACCGAGAGTAAAGCTGATTTGCAGGATTATTCACAAAATAAGCTGAAAGACCTTGAGAACGAGTTATTAGTCAAGCTAAAGGATGCCATAAAGGCTGTAAAGGATGGTTATGATGACTATTCACTTTTGGTTAACTTGAAACGCTTGTATATGCTTCAACTGAGGAAAAAGATCTCTAATGAGGACTTGTATGATGATATGAATAGCATTCTCAGAGATGTAAAAGGCTTGAAAGATGAGGTGCTTGGTTTTGTACTTCTCAATATGTATTTACAGGTAGCCTGGTCCTTGCAGTCCATTGTTAGCGAAAATCCTTCCGAAGCGACTTTAACAGCGCTTTTGTTGAAGAGAACAAATCTCTTGGAACAACTAGAGCACATCATGAACTCCTTGGCTGTAATCCATGAGGAAAGGCGTCGAACTGTTCTTCCATTCAGAGTTACAATCATACTTGCAGAAATGTGGATCTTGTTCAAGAAATCAAAATTTGATTCAACAACATTTGAGAGTCTAGGATATTACCCAGATTTATCTTCTGTTAAGAAGTTTTGGAAGCTTTGTGAGCAGATGCTTAACATCTCAGATGAGACCGAAGATGAACATGCAAATGAAGAATTTATTGAAGAAACTAACAAAGATGCGATTCTAATTGCTGCTTCTAAGCTGGTGATTGAAAATGCTGTTTATAGGGATTATCTTGGTCCGGAAATCATTTCACATTTTGTGATGCATGGGACAAGCACAAGTGAAATCATCAGGCATTTTATTACCGTCCTTAAGAAAACGTCTAATGATATTCCTCAAATGTTTCTGGAGGCATTGAAAAGGGCTTACCAGCGCCATATCGAGGAACAATCGAAGAGCAATTATGTAACTGTCACGGGGAAGTCTTTTACAGATTGCGTGGAATTGGCCAATCGGCTTTCGGGATCGTTTGCCGGTGCCGCCCGCAACAAATTTAGGCTAGACATTTTAAAAATAGTAAAGGATGGCATCTCTTTCGCTTTTTTGGATGCTCCAAAGCAGCTGTCCTTTTTGGAAGCGGTTGTTATCCCATTTGTCTCAAAACTCGCTGCGCCGGACATTCTCGACATCACGAAAGATGTGAAGAGAAGGGTGGAGAATGCGAACCAATACGAAAACCCTAGTGGGTGGCGCCCATATCATACATTTATTGATCAGTTGAATGAAAAATATGCCAAAAATGAGGTCATACAAGACGAGGGAGATGGGACCGTGGTGAAGCGGGGAAGGGGACGTCCTCGGAAGGTTAGGAACCTCGAAGGCAAGAAGCTGTTTCAGGGCGGGGAAGGTTCCAGCGGAGAAGAATCCATTAGCTATTATGCGGAGCAGAACAGTCAAGATGAAGATGATGAAGAGGAGCAGCATCTGCAGCAACAACCGCCGCCGCCGCAGCCTCTTGTTCATGCTGTCAGGGCTTCCACCACTAAGCTCAGGGCTTTAAAAATTTCGCCGCAGGAAGCCATAGGGAGAAGCATCAGCTAGACGTTTTTCCATGGATTTATATTATTTTGGTATGTTTTGTTTATTATTATTATTCAAAGATCTATGTAGCCTTGCCCATCCACTATACTGATCACCTCAAATTCAAGTTTAGAAAAAAATATTAGTGTAAAATAATTGCTTGTTCAACTAAAAGATTAGATGCGTGCTTGAATCAGTAATGATAATAATATAATAATAATTAAGAACTAGCTGATCAATTTTTTTTTTTAATTTTATGCTCCTATAAAATTTATAATTATTGTTTAAAATATTAAAATCATGCTATCTATGAACTGTTCAATTTGCTGTTAT

Network for GWHGAAEX015910

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08514.10	STAG	162	267	8.30E-29

Protein Sequence

>GWHPAAEX015910
MENVGVTSEASARRSKKARVLEPSDGAPSESNERNDPNSADVDQLSGDDGDDDWLFDGAGNRSPKARRKRGPSAKIAGGMEDCSLIEIIKCNGKLIPYAVKKLIEQYEANPKSAMVDILMMLFEACGAKYQFHVDNIDSTDVDNVVVKLVELANFGEIEDLYTSKRKELKNFKENIASFWDSLVLECQNGPLFDNILFEKCMDYVIALSCTPPRIYRHVATLVGLQLVTSYITVAKILAGQRETTQRQLNAEKKKRSDGPRVDSLNKRLSQTHKTISVIEEMMRKLFQGLFMHRYRDVDSDIRVSCIKSLGIWILSYPSLFLQDLYLKYLGWTLNDKVAAVRKTSVQSLQNLYEVDDNVPSLGLFTERFCNRMIELADDIDISVAVSAIGLLKLLLRHQLLTNEELGPLYDLLIDEPPMIRRAIGELVYDHLIAQNVKGSSTISKGEDDKTSEVHLGRMLQILGEFPDDPILSAYVIDDIWDDMKAMKDWKCMISMLLEETPAIEITDIDATNLVRLLNASAKKAVGEKIVPSTDNRKPHYTKAQKEAIDNSRQELTTALMKSYPQLLQKYIADKEKLPSLVEILLLLNLELYSLKRREQSFKCILDLIAEAFFKHGGEDALKSCIKALTFCSTESKADLQDYSQNKLKDLENELLVKLKDAIKAVKDGYDDYSLLVNLKRLYMLQLRKKISNEDLYDDMNSILRDVKGLKDEVLGFVLLNMYLQVAWSLQSIVSENPSEATLTALLLKRTNLLEQLEHIMNSLAVIHEERRRTVLPFRVTIILAEMWILFKKSKFDSTTFESLGYYPDLSSVKKFWKLCEQMLNISDETEDEHANEEFIEETNKDAILIAASKLVIENAVYRDYLGPEIISHFVMHGTSTSEIIRHFITVLKKTSNDIPQMFLEALKRAYQRHIEEQSKSNYVTVTGKSFTDCVELANRLSGSFAGAARNKFRLDILKIVKDGISFAFLDAPKQLSFLEAVVIPFVSKLAAPDILDITKDVKRRVENANQYENPSGWRPYHTFIDQLNEKYAKNEVIQDEGDGTVVKRGRGRPRKVRNLEGKKLFQGGEGSSGEESISYYAEQNSQDEDDEEEQHLQQQPPPPQPLVHAVRASTTKLRALKISPQEAIGRSIS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06671	STAG1_2, SCC3, IRR1	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	68.500
SRP064423	SRR2545915	Juvenile tuber	62.610
SRP108465	SRR5643513	five period of Gastrodia elata	43.940
	SRR5643514	five period of Gastrodia elata	46.030
	SRR5643515	five period of Gastrodia elata	40.760
	SRR5643524	five period of Gastrodia elata	43.210
	SRR5643525	five period of Gastrodia elata	50.880
	SRR5643528	five period of Gastrodia elata	47.580
	SRR5643658	five period of Gastrodia elata	59.930
	SRR5643659	five period of Gastrodia elata	47.970
	SRR5643660	five period of Gastrodia elata	43.740
	SRR5643661	five period of Gastrodia elata	42.520
	SRR5643662	five period of Gastrodia elata	43.810
	SRR5643663	five period of Gastrodia elata	47.050
	SRR5643664	five period of Gastrodia elata	47.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.270
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	47.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	66.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	55.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.720
SRP279888	Gastro	Gastrodia elata tuber	48.74
	Juven	Juvenile tuber	66.10
	Mother_Gastro	Mother tuber of Gastrodia elata	48.99
	Mother_Juven	Mother tuber of Juvenile	65.26