Detail information of GWHGAAEX015913/evm.TU.scaffold_70.102


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG06469.00E-23WD40 repeat protein
nrgi|695046810|ref|XP_009411256.1|1.74E-25PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9M3B4|RID3_ARATH3.00E-23Protein ROOT INITIATION DEFECTIVE 3
trEMBLtr|M0TL32|M0TL32_MUSAM7.00E-26Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P26960_001}
TAIRAT3G491809.00E-23Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006947711914774030+
Transcript Sequence

Network for GWHGAAEX015913

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD40961331.00E-06
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.150
SRR2545915Juvenile tuber3.810
SRP108465SRR5643513five period of Gastrodia elata3.090
SRR5643514five period of Gastrodia elata2.320
SRR5643515five period of Gastrodia elata2.590
SRR5643524five period of Gastrodia elata3.050
SRR5643525five period of Gastrodia elata1.740
SRR5643528five period of Gastrodia elata2.390
SRR5643658five period of Gastrodia elata2.120
SRR5643659five period of Gastrodia elata2.260
SRR5643660five period of Gastrodia elata1.740
SRR5643661five period of Gastrodia elata1.770
SRR5643662five period of Gastrodia elata1.100
SRR5643663five period of Gastrodia elata1.750
SRR5643664five period of Gastrodia elata0.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.040
SRR6049655Rhizomagastrodiae_C368-T10_good_13.090
SRR6049656Rhizomagastrodiae_C368-T07_good_12.160
SRR6049657Rhizomagastrodiae_C368-T07_good_12.100
SRR6049658Rhizomagastrodiae_C368-T04_good_12.330
SRR6049659Rhizomagastrodiae_C368-T04_good_12.210
SRR6049660Rhizomagastrodiae_C368-T01_good_12.190
SRR6049661Rhizomagastrodiae_C368-T04_good_13.550
SRR6049662Rhizomagastrodiae_C368-T01_good_12.310
SRR6049663Rhizomagastrodiae_C368-T01_good_12.340
SRR6049664Rhizomagastrodiae_C368-T10_good_11.760
SRR6049665Rhizomagastrodiae_C368-T10_good_11.760
SRP279888GastroGastrodia elata tuber 1.46
JuvenJuvenile tuber3.17
Mother_GastroMother tuber of Gastrodia elata 4.27
Mother_JuvenMother tuber of Juvenile 4.02