Detail information of GWHGAAEX015929/evm.TU.scaffold_71.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4480 | 1.00E-113 | Heme oxygenase |
| nr | gi|225445499|ref|XP_002285192.1| | 3.85E-117 | PREDICTED: heme oxygenase 1, chloroplastic [Vitis vinifera] |
| Swissprot | tr|O48782|HMOX1_ARATH | 3.00E-114 | Heme oxygenase 1, chloroplastic (Precursor) |
| trEMBL | tr|E2JEI2|E2JEI2_CUCSA | 4.00E-115 | Uncharacterized protein {ECO:0000313|EMBL:KGN65328.1} |
| TAIR | AT2G26670 | 1.00E-113 | Plant haem oxygenase (decyclizing) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000074 | 505634 | 522363 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015929
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01126.19 | Heme_oxygenase | 107 | 269 | 7.40E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K21480 | HO, pbsA1, hmuO | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Porphyrin and chlorophyll metabolism | map00860 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006788 | Biological Process | heme oxidation |
| GO:0004392 | Molecular Function | heme oxygenase (decyclizing) activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 47.060 |
| SRR2545915 | Juvenile tuber | 41.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 121.110 |
| SRR5643514 | five period of Gastrodia elata | 184.380 | |
| SRR5643515 | five period of Gastrodia elata | 119.220 | |
| SRR5643524 | five period of Gastrodia elata | 140.660 | |
| SRR5643525 | five period of Gastrodia elata | 279.920 | |
| SRR5643528 | five period of Gastrodia elata | 190.080 | |
| SRR5643658 | five period of Gastrodia elata | 316.580 | |
| SRR5643659 | five period of Gastrodia elata | 24.170 | |
| SRR5643660 | five period of Gastrodia elata | 14.950 | |
| SRR5643661 | five period of Gastrodia elata | 20.580 | |
| SRR5643662 | five period of Gastrodia elata | 41.910 | |
| SRR5643663 | five period of Gastrodia elata | 127.690 | |
| SRR5643664 | five period of Gastrodia elata | 76.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 162.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 153.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 163.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 168.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 141.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 149.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 148.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 186.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 91.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 66.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 197.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 197.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 105.41 |
| Juven | Juvenile tuber | 30.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 131.59 | |
| Mother_Juven | Mother tuber of Juvenile | 121.23 |