Detail information of GWHGAAEX015933/evm.TU.scaffold_71.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0251 | 0 | Clathrin assembly protein AP180 and related proteins, contain ENTH domain |
| nr | gi|672122404|ref|XP_008784532.1| | 0 | PREDICTED: putative clathrin assembly protein At2g25430 [Phoenix dactylifera] |
| Swissprot | tr|Q8S9J8|CAP1_ARATH | 0 | Probable clathrin assembly protein At4g32285 |
| trEMBL | tr|K4AKQ0|K4AKQ0_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si039474m} |
| TAIR | AT4G32280_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000074 | 758941 | 762354 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015933
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07651.15 | ANTH | 31 | 310 | 1.00E-87 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0048268 | Biological Process | clathrin coat assembly |
| GO:0005543 | Molecular Function | phospholipid binding |
| GO:0005545 | Molecular Function | 1-phosphatidylinositol binding |
| GO:0030276 | Molecular Function | clathrin binding |
| GO:0030136 | Cellular Component | clathrin-coated vesicle |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 39.300 |
| SRR2545915 | Juvenile tuber | 29.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 76.460 |
| SRR5643514 | five period of Gastrodia elata | 63.550 | |
| SRR5643515 | five period of Gastrodia elata | 77.050 | |
| SRR5643524 | five period of Gastrodia elata | 64.810 | |
| SRR5643525 | five period of Gastrodia elata | 126.090 | |
| SRR5643528 | five period of Gastrodia elata | 98.150 | |
| SRR5643658 | five period of Gastrodia elata | 106.620 | |
| SRR5643659 | five period of Gastrodia elata | 102.570 | |
| SRR5643660 | five period of Gastrodia elata | 104.790 | |
| SRR5643661 | five period of Gastrodia elata | 119.170 | |
| SRR5643662 | five period of Gastrodia elata | 113.400 | |
| SRR5643663 | five period of Gastrodia elata | 98.960 | |
| SRR5643664 | five period of Gastrodia elata | 124.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 112.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 90.320 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 93.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 106.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 106.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 125.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 101.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 87.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 98.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 106.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 115.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 115.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 83.74 |
| Juven | Juvenile tuber | 67.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 114.88 | |
| Mother_Juven | Mother tuber of Juvenile | 81.76 |