Gene detail

Detail information of GWHGAAEX015934/evm.TU.scaffold_71.32

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|433653951\|ref\|YP_007297659.1\|	3.00E-51	DNA/RNA helicase, superfamily II, SNF2 family [Thermoanaerobacterium thermosaccharolyticum M0795]
KOG	KOG0391	0	SNF2 family DNA-dependent ATPase
nr	gi\|672176967\|ref\|XP_008808565.1\|	0	PREDICTED: LOW QUALITY PROTEIN: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Phoenix dactylifera]
Swissprot	tr\|Q7X9V2\|PIE1_ARATH	0	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
trEMBL	tr\|D0EX74\|D0EX74_ORYSJ	0	DEAD/DEAH box helicase domain-containing protein PIE1 {ECO:0000313\|EMBL:ACX54781.1}
TAIR	AT3G12810	0	SNF2 domain-containing protein / helicase domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000074	866548	945187	-

Transcript Sequence
>GWHTAAEX015934 TTCGTTCTCCCGAAGCTCGCCTCGCTGACGTGCTCGTCTCCGCCCGACGCTTCGCCCGACGCGCTCGCTTGGCTGACGCTTTCAGCCGATGCTTGCCGGACGCAGAGGTACTTTTGAGAAAGAATCCATGGCCTCAAAGGGTCCTAGATCTAAATTGGACCATGACAGTAGAACCAAACGTCAAAAGGCACTTGAGGGTCCCAGGGAGCCACCTCGACTTAAAGCCCACTGGGATCACGTTTTAGAGGAGATGGTTTGGTTATCAAAAGATTTTGATTCTGAGAGGAAATGGAAATTATCCCTTGCAAAGAAGGTTGCCTTAAGAGCCAGCAAGAACGTCCTAGAACAAGCCTCAAAGGGTGATAGGAAACTTAAGGAAGAAGAGCAACGCATGAGAAAAATTGCACTTAATATCTCTAAAGACGTGAAGAAATTCTGGACAAAGATAGAAAAGCTGGTGCTTTATAAGTATCAATTAGAGTTTGAGGAAAAAAAGAAGAAGGCTCTTGATAAGCAACTTGATTTTCTTTTGGGTCAAACGGAAAGGTACTCTACAATGCTCGCAGAAAATCTTGTGGCTTTGCCTTCTCATGAACTGGCCAATGTAGACTTTGAATCTCATAAGTCAGTCAATGTAGATGGGGAGGATAATCTAAACCGCACAATAAATAGTTCAACTGATCATGAAACACTATCAGGCCTTATGGAGATTGATGATGATTATATAGCTCGATCTGAAGTTGATGTGGTAGATGATGAACATACCATTGAGGAGGATGAGGCTCAAATTTCAGAAGGAGAACGGAGGGAAGAATTAATTGCATTGAAGGCAGAATTAAATGTTCCACTTGAAGAACTTCTCAAAAAGTACACTTGTAATAAAGTTAGCAGGGAAATCGATTTTGATGAGGGTGAACATGTGGCTAAAGAAATTGCAAAATTTGGGGACCCTTATAAAGATTTAGAATCTACCATTGAATTATCTGATTCAATTGATGAGATTGGAAAGAACAGGAATTTTGTACATGTTTCTCACGATGATCATGTTGAAACTATTGACTATTTTTCCTGCACGGTAGGACAGCTGGATTTTAAATCTGAAGTAGAAGACAAGCTTCAATCAAAGCTTTTAGACGACTCAGAGATGAAACATTCAATCCATACTTTTGATGATGAAACGAATGATGAAGATTATGTGATTGCTGTCGAGGAAGAAAAGGATGATGAAGGAACCCTGTCTGAAGAGGATGAATTGGCAAAAAGAGAAGCAATTGACCCTTTGGATGAGGTAAAGCAATTGCAACAAGAAAGTGAGATGCCTTTACACGAACTACTTGGGAGGTATGGACAGGAGATGGAGAATGATGATAATAATGGTTCCGTGGGATCCAAATGCTCTTCCTCTGGTTCAGATGGTTCATTGGAGAATGAGACATGTGTTATTCAATCAGGTGATGCAGATCTCTCTAAAGTCGATCAACACGAGCATGTAAACTCTTCTCAAATGATCACAGAATCCAATATAGAAAACATTGAAGATGACATGAAACTTGGACACGATCAAGTTCTTGATAAGCGGGACAGCAAAAATATGATTGCTGATGCAGCAGCAGCAGCAAGATCTGCTCAGCCTACAGGCAATACATTCTTGACTACCAAAGTGCGAACTAAGTTCCCTTTCCTCCTCAAGCACCCTTTGCGAGAGTATCAGCATATTGGCCTGGATTGGTTGGTTACCATGTATGACAAGCGACTTAATGGAATTCTTGCAGATGAAATGGGTTTGGGAAAGACAATCATGACAATTGCTCTTCTAGCACATTTAGCCTGTGAAAAAGGAATATGGGGACCTCATCTTATAGTAGTTCCCACTAGTGTAATGCTTAATTGGGAAACCGAGTTTCTTAGGTGGTGCCCTGCTTTTAAAATACTGACATACTTTGGAACTGCAAAAGAACGGAAGCAGAAGAGACAAGGTTGGTTGAAACCCAACTTCTTTCACGTATGCATCACTACTTACAGACTTGTAATACAAGATTCAAAAGTTTTTAAGAGAAAAAAGTGGAAATATCTCATCCTTGATGAAGCTCATTTGATAAAGAACTGGAAATCTCAAAGGTGGCAAACTCTTTTAAATTTCAACTCAAAACGACGAATTTTGTTGACTGGCACACCTTTACAAAATGACCTTATGGAACTTTGGTCTTTGATGCATTTTTTAATGCCTCATATATTTCAATCTCACCAGGAATTTAAAGATTGGTTTAGCAATCCTATCTCCGGAATGGTGGAGGGGCAGGAAAAGGTTAACAGAGAAGTAGTTGATCGTTTGCATAATGTTCTTCGTCCTTTCATACTTCGTCGCCTAAAAAGAGATGTGGAAAAGCAACTTCCCAAGAAGCACGAGCATGTCATATACTGTAGACTTTCAAGAAGGCAAAGGAATCTGTATGAAGACTTTATTGCAAGCTCTGAAACACAAGCAACCCTTGCTAGTGCAAATTTTTTTGGAATGATTAGTGTAATAATGCAACTTAGGAAGGTCTGCAATCATCCTGATCTTTTTGAGGGTCGTCCAATCATAAGCTCTTACGACATGGTTGGTATTGATATGCATTTAAGCTCAACAATTTCTTCAATATTTTCTCCTGGTTCGCTTACAGAGATTAATTTGAAGGGCTTAAATCTTATTTTTTCTCATCATGAGTTTGACATGAATTCTTGGGAAACTGAGGAATTTTTATCTATTTGTTCATCAAAATTAATTGAGCACAGTATGCTGAAATTTATAGGGACACCAGTCAATGGTCAACATGACCGAAAAAGAGTTCAAGGAACTAATATTTTTGAAGAAATTCAGAAAGCCCTTTATGAAGAAAGATTGATAGAATTAAAAGCAAGGGCGGCTTCTATTGCATGGTGGAATAATTTGAGATGCCAGAAAAAACCCATCTATGGTACTAATCTTAGGGAACTTGTTACAGTTAGAAGTCCTGTTGAAGATATTCACAAGCAGAAGAATAGCCCCTCCTGTTATATGAATTTTTCATCTTATCTTGGAGAGCTAGTCCTTTCAGCTGATGAGCGGTTCCAAAAGATGATAGGCACAGTTGAAAGCTTTATGTTTGCAATTCCAGCTGCGCGTGCTCCTCCTGTTGTATGCTGGTCCAGTAAAGGGGGGTCTTGTTTGTTTATGACACAAACTTATGTTGATAGATGTACTGAGATTTTCTCACCCCTCTTCTCCCCCTATAGACCCGCCATTGTGCGCAGACAAGTATATTTTCCTGATAGACGTTTGATACAGTTTGACTGTGGTAAGCTACAGGAGCTTTCTATCCTTTTAAGGCGCTTAAAATCAGAAGGCCATAGAGCCTTGATATTTACACAAATGACCAAGATGCTTGATATTTTGGAAGCCTTCATTAATTTGTATGGTTACACCTATATGAGGCTGGATGGATCTACACCACCAGAACAGAGGCAGACTCTAATGCAGCGTTTTAACACAAACTCAAAAATTTTTCTATTCATTCTATCAACACGAAGTGGTGGAGTTGGGATTAATCTTGTGGGAGCTGATACTGTTATCTTCTATGATAGTGATTGGAACCCAGCAATGGATCAACAAGCTCAAGACAGATGTCACAGAATAGGACAAACTCGGGAAGTGCATATATATCGACTTGTAAGTGAGAGTACAATTGAAGAAAACATTTTGAAGAAAGCAAATCAAAAGCGTTTACTTGATGATTTGGTCATACAGAGTGGAAGTTACAATGTGGAGTTCTTAAAAAAGCTTGACCCAATGGAACTGTTTTCTGATCATAAATCACTTTCTGCTGGAAACTTATGTAGTGTGAATGCAGAATCTTCCACTGCAATAGGGGCTGATATTTCAAATGCAGATGTTGAGGCAGCTATTATGCATGCAGAAGATGAAGCCGATTATATAGCTTTGAAAAGAGTAGAACAAGAAGAAGCAGTGGAGAATCTAGAGTTTTCAGAAGATGCTATAGGGAAAGTTGATGATGATGAAAATGAGGAAGAAACAAAGCTAGATGAAAAGGGTTTTGATGAACTTAAAATTTACGGCAGAAATATGGGGAGCAAGCAAAATGGTGACAATAGTCTTAATTCTGAAAAAGCTCTTGCTTTAATTGGGGGATCTGAAGATATTGATATGTTGGCTGATGTGAAACAGATGGCCGCTGCAGCTGCAGCTGCTGGGCACGCTAGTTCAATGTTTGAAAACCAACTTCGACCCATTGATAGATATGCTATGCGGTTTTTGGACTTGTGGGATCCAATAGTTGACAAATCGTCTATAGAATATCATGACAGTGTGGAGGAAGAGGATTGGGAGTTGGATAGAATTGAAAAGTTTAAAGATGATATGGAAGCGGAGATTGATGAAGACCAGGAACCACTTTTTTATGAAAGTTGGGATGCTGATTTTGCCACTACAGCATATCGGCAGCATGTTGAAGCTTTAGCTCTGCAACAGCTGTTGGAAGAAAAGGAGTGTGAAGCTAACGATGCATATGATGAAGATGAAATTTTTGATGCCATTGGGTATGGAGTATCTACTGAGCGGAAGGCCAAGACAAAGAAGAAGTTGAAGAAAACAAAGTTTAAGACTCTCAAGAAAGGTCGTCTAGCTTCTGAATCAGAAGTTATTTCAGATCAGCCACATGTAGTAGATCCATTATCTGATGATGAGAGATATCTTTCTTCAGACGACATTTCTACTGGTTCTCCACCCGGATCTTCTACTCAAAGAAAGCGTAAAAGGGCTTCATTTGCTACTAACGATGAAAATATTTTACAGAAGGGCTCAAAGAAGCTGAGGAAGGCTTCTGAAAGTAAGTATGGACGGGATTCTGACTCTTTGGTTAAGCAACTTTTGGAATCCGGAGAGTTGATGTCTGGAGATGGATTCAATGAAGTTGATCTTAAACATGGTAATAAAGGGAAGAAGGGTGGAAAGGTCTCTATCACAGTGATGCCCCTTAAACGTGTTATGGTGGTCAAACCAGAGAAATTTAAAAAGAAAGGGCATGTCTGGTCTAAAGATTACTTACCACCAACAGATTACTGGATGGCTCAAGAGGATGCCATACTATGTGCAGTTGTACATGAATATGGAACAAATTGGACTCTTGTGAGTGATGTGCTTTACAGTATATCTGGTGGGGGAAGCTACAGAGGATTGTTCCGCCATCCTGTCCGTTGTTGTGAAAGGTTTAGGGAAATATTTGTTAGTTATATCCAGTCCACTGTAGACAGTCTGAATGCTGAAAAAGTTCCTGTAACTGGGTCTGGAAAATCCCTTCTTAAAGTAACAGAGGAGCATGTCCGTTCCCTGCTTAATGTTACAAGCAACGTTCCAAACAATGAATTGCTTCTTCAGAAACATTTTGTTGCCATTCTTTCTTCAGTATGGAGGGAAAGATGCCGCGTTGAGCGAAGTCAGACTGCGCCGTCTTTCCAAAGCAGTCATCATAACGTACAAATTTTAAGTTATTCTTCGATGAAGCCCAACATAGAGCAGGCAGACGCAAGGCATTCCAAAAATTTGGTAATGACTGCCCTCAGTGATAATAGCAATGAAACACATTGTGAGCAAGAGCGAGTTCTACGCATGCCAGATGCTATTGTTCCTGTTGTGGCTGATCAGTTAGAAATAACTTTGGACTTATCTTCTACAAGGGAATCCTTTTCTGAAGCTCTGTTTCCTTCTTTAATTAATGTTACAATACATGTGTTCGAGCAGAAACATGATCTTGAATTTAATGGGAGCTATTCCTCTGCTAAACCTTATTCAAAAATTGCTGAGAGCAAATTCAGGCAGACCTCACAAACATGCTTGGAGGGTGAATTCCAAGGATGGGCAGAAGCTGCATTTTCATTCTCCGATGCCTCCCGGCCTAGGACTGGCCCAAAATCTCAGTTTTTAGGAAAGCACAAGCCCGTTTCTGACCCTGTCAGACCCCCAAAATCTAAGGTTCCGAGGACTGTGTATTCTTTGGATGATTCTGGATTTGCTGCAGAAGCTCTCAAACCATCAATAATCATGGAGTTCAACCATTTGGCTTGCACTGCTACATCCGAAGGAGAGGATGTACACCTGTTTGATTCTGTGCCGCATGCATATGATGCAGATTTTCTCAGGGATTTGGAGGATCTTGATTTACATGCAAATGCTGCTGACATTGGATGAGACATTATTATTATTATTATTGTTGTTATTTGACTCAAATGGATAGGGGAGACTCTACAAAAGCAGCAACTTCAATGAAATAGGAAGCAGGGGGAAGCTGAAACAATCGTATAAGCTCCTAGATAATATATATATATATATATAT

Network for GWHGAAEX015934

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07529.12	HSA	40	106	1.40E-14
PF00176.22	SNF2_N	552	825	2.10E-70
PF00271.30	Helicase_C	1082	1190	2.20E-20

Protein Sequence

>GWHPAAEX015934
MLAGRRGTFEKESMASKGPRSKLDHDSRTKRQKALEGPREPPRLKAHWDHVLEEMVWLSKDFDSERKWKLSLAKKVALRASKNVLEQASKGDRKLKEEEQRMRKIALNISKDVKKFWTKIEKLVLYKYQLEFEEKKKKALDKQLDFLLGQTERYSTMLAENLVALPSHELANVDFESHKSVNVDGEDNLNRTINSSTDHETLSGLMEIDDDYIARSEVDVVDDEHTIEEDEAQISEGERREELIALKAELNVPLEELLKKYTCNKVSREIDFDEGEHVAKEIAKFGDPYKDLESTIELSDSIDEIGKNRNFVHVSHDDHVETIDYFSCTVGQLDFKSEVEDKLQSKLLDDSEMKHSIHTFDDETNDEDYVIAVEEEKDDEGTLSEEDELAKREAIDPLDEVKQLQQESEMPLHELLGRYGQEMENDDNNGSVGSKCSSSGSDGSLENETCVIQSGDADLSKVDQHEHVNSSQMITESNIENIEDDMKLGHDQVLDKRDSKNMIADAAAAARSAQPTGNTFLTTKVRTKFPFLLKHPLREYQHIGLDWLVTMYDKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLRWCPAFKILTYFGTAKERKQKRQGWLKPNFFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFSNPISGMVEGQEKVNREVVDRLHNVLRPFILRRLKRDVEKQLPKKHEHVIYCRLSRRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIISSYDMVGIDMHLSSTISSIFSPGSLTEINLKGLNLIFSHHEFDMNSWETEEFLSICSSKLIEHSMLKFIGTPVNGQHDRKRVQGTNIFEEIQKALYEERLIELKARAASIAWWNNLRCQKKPIYGTNLRELVTVRSPVEDIHKQKNSPSCYMNFSSYLGELVLSADERFQKMIGTVESFMFAIPAARAPPVVCWSSKGGSCLFMTQTYVDRCTEIFSPLFSPYRPAIVRRQVYFPDRRLIQFDCGKLQELSILLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTPPEQRQTLMQRFNTNSKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLVSESTIEENILKKANQKRLLDDLVIQSGSYNVEFLKKLDPMELFSDHKSLSAGNLCSVNAESSTAIGADISNADVEAAIMHAEDEADYIALKRVEQEEAVENLEFSEDAIGKVDDDENEEETKLDEKGFDELKIYGRNMGSKQNGDNSLNSEKALALIGGSEDIDMLADVKQMAAAAAAAGHASSMFENQLRPIDRYAMRFLDLWDPIVDKSSIEYHDSVEEEDWELDRIEKFKDDMEAEIDEDQEPLFYESWDADFATTAYRQHVEALALQQLLEEKECEANDAYDEDEIFDAIGYGVSTERKAKTKKKLKKTKFKTLKKGRLASESEVISDQPHVVDPLSDDERYLSSDDISTGSPPGSSTQRKRKRASFATNDENILQKGSKKLRKASESKYGRDSDSLVKQLLESGELMSGDGFNEVDLKHGNKGKKGGKVSITVMPLKRVMVVKPEKFKKKGHVWSKDYLPPTDYWMAQEDAILCAVVHEYGTNWTLVSDVLYSISGGGSYRGLFRHPVRCCERFREIFVSYIQSTVDSLNAEKVPVTGSGKSLLKVTEEHVRSLLNVTSNVPNNELLLQKHFVAILSSVWRERCRVERSQTAPSFQSSHHNVQILSYSSMKPNIEQADARHSKNLVMTALSDNSNETHCEQERVLRMPDAIVPVVADQLEITLDLSSTRESFSEALFPSLINVTIHVFEQKHDLEFNGSYSSAKPYSKIAESKFRQTSQTCLEGEFQGWAEAAFSFSDASRPRTGPKSQFLGKHKPVSDPVRPPKSKVPRTVYSLDDSGFAAEALKPSIIMEFNHLACTATSEGEDVHLFDSVPHAYDADFLRDLEDLDLHANAADIG

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.220
SRP064423	SRR2545915	Juvenile tuber	24.950
SRP108465	SRR5643513	five period of Gastrodia elata	13.680
	SRR5643514	five period of Gastrodia elata	16.020
	SRR5643515	five period of Gastrodia elata	13.590
	SRR5643524	five period of Gastrodia elata	14.010
	SRR5643525	five period of Gastrodia elata	14.380
	SRR5643528	five period of Gastrodia elata	11.540
	SRR5643658	five period of Gastrodia elata	16.260
	SRR5643659	five period of Gastrodia elata	14.190
	SRR5643660	five period of Gastrodia elata	15.730
	SRR5643661	five period of Gastrodia elata	13.830
	SRR5643662	five period of Gastrodia elata	12.530
	SRR5643663	five period of Gastrodia elata	12.760
	SRR5643664	five period of Gastrodia elata	12.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.110
SRP279888	Gastro	Gastrodia elata tuber	16.08
	Juven	Juvenile tuber	19.31
	Mother_Gastro	Mother tuber of Gastrodia elata	14.81
	Mother_Juven	Mother tuber of Juvenile	19.00