Detail information of GWHGAAEX015935/evm.TU.scaffold_71.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1555 | 4.00E-118 | 26S proteasome regulatory complex, subunit RPN11 |
| nr | gi|743754852|ref|XP_010920788.1| | 0 | PREDICTED: lys-63-specific deubiquitinase BRCC36-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q8LAZ7|CSN5B_ARATH | 4.00E-07 | COP9 signalosome complex subunit 5b |
| trEMBL | tr|I1PXJ8|I1PXJ8_ORYGL | 1.00E-172 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA05G0209600.1} |
| TAIR | AT3G06820 | 4.00E-118 | Mov34/MPN/PAD-1 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000074 | 1005059 | 1090409 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015935
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01398.20 | JAB | 4 | 120 | 4.70E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | JAMM |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11864 | BRCC3, BRCC36 | Homologous recombination | map03440 |
| NOD-like receptor signaling pathway | map04621 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0070536 | Biological Process | protein K63-linked deubiquitination |
| GO:0006281 | Biological Process | DNA repair |
| GO:0004843 | Molecular Function | thiol-dependent ubiquitin-specific protease activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0070552 | Cellular Component | BRISC complex |
| GO:0070531 | Cellular Component | BRCA1-A complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 51.930 |
| SRR2545915 | Juvenile tuber | 41.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.360 |
| SRR5643514 | five period of Gastrodia elata | 17.910 | |
| SRR5643515 | five period of Gastrodia elata | 15.780 | |
| SRR5643524 | five period of Gastrodia elata | 17.680 | |
| SRR5643525 | five period of Gastrodia elata | 16.260 | |
| SRR5643528 | five period of Gastrodia elata | 14.140 | |
| SRR5643658 | five period of Gastrodia elata | 18.400 | |
| SRR5643659 | five period of Gastrodia elata | 21.150 | |
| SRR5643660 | five period of Gastrodia elata | 25.180 | |
| SRR5643661 | five period of Gastrodia elata | 18.900 | |
| SRR5643662 | five period of Gastrodia elata | 22.940 | |
| SRR5643663 | five period of Gastrodia elata | 24.050 | |
| SRR5643664 | five period of Gastrodia elata | 22.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.79 |
| Juven | Juvenile tuber | 18.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.14 | |
| Mother_Juven | Mother tuber of Juvenile | 15.53 |