Gene detail

Detail information of GWHGAAEX015949/evm.TU.scaffold_71.60

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743838583\|ref\|XP_010936742.1\|	0	PREDICTED: uncharacterized protein LOC105056295 isoform X3 [Elaeis guineensis]
trEMBL	tr\|M0TQE8\|M0TQE8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P14450_001}
TAIR	AT5G23490	3.00E-97	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000074	1947791	2037907	+

Transcript Sequence
>GWHTAAEX015949 GATGTTTTTGAGTACCATAGCATTACCCTAAACTAGCACGAGGAAATTTGATATTTTAACCGGCCAGTTGACCTCTCTCGACTCTCGACTGCTGCTGAGTCTGGTCGTTGGATCAACGGAAAAGACGAGGAAAGGAACGGCGCTCTTCTTTCTCTCGCGATATCCTCGAAGAGCTCACGAATCAGCTCCTCGCTTTCCTCATGCTTGTTCCCCTCACATGTCACATCTGCCTTCTTATTCTTCCGAACCTAACAATCCCTTGAATTGGATTCACCTCCGCCGGTACCTGTAGTTTGCAACCCACGATATGGGTGCCTACGACGGGGATTCTGGCCACGGTCGTGAACCACGGCTTCCGTGGATCCCGCCAGCAGAGCCCGTCGACGCGGGCCTCACTCAGCAGTTCGCGGCGCTCGAAATGGGCGATCCATCTAACGGCGGTCTCTTTCAAGTTATGAAGGCCATGGAGGATGCCGAGAGCACCATCAAGCATCAGTTGAACGAGAACAATCATTTAAGAGAGCAGCTTTTGCAGCAATCACAAGAACTGGAGAAATACAAGATAGAATCTGTGGCTAAAAGGATTTCTGCTGATGAGTTGAGAGATGAACCTTCAATGGGAATGTATGAAGCTAATGCTACAAATTACTTGGTGAGAAATGAAGCAGATACGGTGAAATTAATGGACGATGGTTTAATAATTTCAAGAGATGTTATTCAAAGAAGTGATGGGCCTTCTTTAGTACCTAACTTGAGAAATCATCCGCATGCTGCCGAAGGCATCAAAGTGAATGGTAATTTAAAAGTATCTGCTGGATTACAGAGTGTTCCTGATAGTGCTGGTCATTCTCAGTTCTCAACACCATCTTCAAGGTCTATTTCTCCAAGCAGGCGTCAAAGGGACGGAGAGTATGATCCGAGGATCAATACAATTTCGCATGGGCTGATGCCAGTTTCTGAAATGAACTCTAACGTTGTCTGGAAAAGGGATCTTATTATTAAGGTTAGAGAGCGTGAAGAAGAGATTATACTTTTAAGAAAACATTTAGCTGACTACTCAGTGAAGGAAACTCAAATACGCAATGAGAAATATGTTTTAGAAAAACGCATTGCTTATATGAGAATGGCATTTGATCAGCAGCAGCAAGAATTAGTTGATGCTGCATCTAAAGCTCTTTCTTATAGACAAGATATTATTGAGGAAAATATTCGCCTGACATATGCATTACAGGCGGCCCAACAAGAAAAGACAACTTTTGTTTCTTCTTTGTTGCCACTTCTTTCAGAATATGGTTTCCAGCCTTCTGTTCTTGATGCTCAGTCCATTGTCAGTAATCTAAAGGCTTTATTTAGACATTTGCAAGAAAAACTCATAGTCACTGAGGAGAAGTTGAAAGACTCTCAATACCAGTTAGCTCCATGGTGTCTTGAACCAGCAACTAATGCGAACCTCTCTCCCCATTCACCCTCACTTCCTCATGGTGCAAACCTTGTTACTTCTAGCAAAGGACTTGAGATTGTGCCGCAGCCACCATATTCTCATGCACAATCTCCTGGGTCTTCGCCAGCCAATAATGGTCTGGCAAAAGAATGGGAGGGAGTTGGCAATCATAATCAGCATGCTATTTCCAGCATCATTGCCACAAAAAGTCAAGGTCACAATATTTTGGAAGGAAATACTCTTTCTGTGAATAGGAACGTGACACATGATATACCAACCCATTTAAGTAAAGGCGATTCTCCCATCCTTTTTAGTTCTGAGTCAAGAAATCAGAACCCTTCTTTCAAGGAGCTCGTCACAAACAATGAAGCAGTTAATCCTCAAGCAACTATTGTTCCCCAAGGCAAAGATCCTTCTGTCCATTGGGTTCCTACAAACTCTCCTTACCTGTCTTCTGGACTTGACGATCCTAACTCATCCTATCCTTACCTTCCGCCAGTCCTTGAAGAGCCAAGTTCTTCATTTTCTGAAGCTGCTGAAGATGATCCGTTGCCTGCAATTGAGGGGCTTCAGATTTCAGGTGAAGCTTTTCCTGGAAGAGAACTTCAAGCTAGTGGATACTCCATCAATGGGACAACCAGTTGTAATTTTGAATGGGTACGGTATCTAGAAGATGGATCTGTGAATTATATAGAAGGAGCTAAACAGCCCACGTATCTCCTTACATCTGATGATGTTGACTCCTATCTTGCCATTGAGGTTCATCCATTAGATGACAGAAAACGGAAGGGTGAGCTAGTTAAGGTGTTTGCAAATGAACAAAGAAAGATCACTTGTGATCCTGCAATGCAAGAACAGATAGAGAAAACGTTATCTGTTGGACTTGCATCATATGAAGTGGCATTATCGGCCAGATTTTTGAATATTTGGGAGCAAGCTATTTTGGCGATCAAAAGAGGTGGTTATAGCATCAAGTGCAATGGACCCCGTGGTGTCGTTGTTACAGAGAAGTTTTTACCAGTTACTGCTATAACTATTCCCTATGGACATCCAACAGAGTTTTCAATTCTATGTTCTGATGGTGCAGAATATCTTTTGAGAGCAGTAGACAGCTGGTTAAGAGACACAATTGTTCTGACCATGAGATTGTTCAAAAAGATGGCTGTGGAGAAGAGGAAAGGGAAGAAGAGGCATCTGTTTTTCAAATCTAGCTTCAATTAAGCTAAGGTAGTCAACTAATGGATGCTGCTGCCTGCACATATTGTTATGTAAGCTTTAAGAGGCTTTCATGAATTATTGTCATCGAGTAATTGCAGGAAAACTGTGCGGTTTGTCTATATAAAGGATGCAGCAGCTGTTGTAAAGAGATTTGCCGATTCTTTGTAATGTCTCAACGGTTAATTTTATCGAGGTTTAAAAAAAATTCCTATGTCGAGCTTAGTTCTTAACGTTTCTTCCACTAAATTTTTCATTCGAAACAATCTAACATAGATTAGCTTGATTTTAGTTGAATGAAACTTATAGCAATACAAGGACAATATCAAGCTGTTATGAATGATGTATCGGTTATTCAACTATATAAGAGAAATTCAATTTTTACAGAAAT

Network for GWHGAAEX015949

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.220
SRP064423	SRR2545915	Juvenile tuber	22.510
SRP108465	SRR5643513	five period of Gastrodia elata	13.510
	SRR5643514	five period of Gastrodia elata	11.970
	SRR5643515	five period of Gastrodia elata	14.290
	SRR5643524	five period of Gastrodia elata	11.610
	SRR5643525	five period of Gastrodia elata	10.130
	SRR5643528	five period of Gastrodia elata	9.320
	SRR5643658	five period of Gastrodia elata	11.490
	SRR5643659	five period of Gastrodia elata	11.690
	SRR5643660	five period of Gastrodia elata	11.880
	SRR5643661	five period of Gastrodia elata	12.270
	SRR5643662	five period of Gastrodia elata	14.030
	SRR5643663	five period of Gastrodia elata	9.280
	SRR5643664	five period of Gastrodia elata	9.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.450
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.500
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.500
SRP279888	Gastro	Gastrodia elata tuber	10.54
	Juven	Juvenile tuber	19.62
	Mother_Gastro	Mother tuber of Gastrodia elata	17.81
	Mother_Juven	Mother tuber of Juvenile	16.94