Gene detail

Detail information of GWHGAAEX015956/evm.TU.scaffold_71.68

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1213	2.00E-51	Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1
nr	gi\|695016271\|ref\|XP_009395037.1\|	1.15E-123	PREDICTED: sister chromatid cohesion 1 protein 3-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9FQ19\|SCC13_ARATH	7.00E-52	Sister chromatid cohesion 1 protein 3
trEMBL	tr\|M0SK30\|M0SK30_MUSAM	4.00E-123	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P01130_001}
TAIR	AT3G59550	2.00E-51	Rad21/Rec8-like family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000074	2451190	2457179	+

Transcript Sequence
>GWHTAAEX015956 ATGTTCTACTCCCACGTTCTTCTCGCTAAGAAAAGTCCTTTAGGGGCTATATGGATTGCAGCTCATCTGGAGCACAGGATCAAGAGGCCACAGATTGAAAGCATCAGCATACCTTCGTTTGCAGATAAAATCATGATGTCTGATGTTCCAATCGCTCTAAGGCTTTCGGGGCATCTGCTTCTTGGACTTGCTAGGATATATTCATGGAAGGTAAATCATCTTTTCTCAGACTGCAACAGACTGGTTACTAGTATAAGGAAGGCCTTTGCAGCAGTGACAGTTGATCTACCTATAGAAGAAGATCATGCTCCATTTGAGTCAGTGACCTTGCCAGAGACGTTTGATCTTAATGCTTTGGACTTGGACTTGCCATCTTATAAAATAGATGAACCTGATACACACATCAAGTCATATAACCAGATTACCATGAGTGATCAAATCCCAATGGAAGCAGAGCAATATGTAGCTGTTCATATAGATGAGGAGAATGGGGTGAGTCTATCACATGTACAATCAATTAGATTGAATCAGTCTCCCCAACCAACAAATGTGCTACTTTCATCTCCCCAACAAACAAACATAAGTCCAGTTTCCGGGCAACTAGAAGACGACACACTGCCTCCTTTCGAAGGTGCTCTGAGTCCTCGTTTGCACAACATTGTTAGCGGCAGTGCTTCAACTGAGATTGAATTGACTGTTATGACTACTAAAGGTAACAGTACACCGCAAGGAACTCTGGATACTGTAAATATGCTCTGTGATCCTGGTCCTCTCCTTCAAGATGCTGATATCCCTGGAGACATAAGAAGTGATCATGAGTCTGGTCAAACCTTTAGCTGGAGGCAAAATCTCTCAACTATACCTGAAGGTACATCAATTCCCGAACTGAACTCTTTACCTGGTTTTAAACAGTTGGCCAATGCAGCAGAAAATATAGACAATACTCCTGGCCGTAAAGCCTCGCCCGAGATGCACCCACCTGTTCTATCTGAACCTGGTCCTCATGTCAAGCGGGGAAATGTGAAGAGAAGGAAAAGGAAACAATATTTCGATCGACAAGTTGTGTTGAGCAATATGCAAATGAAAAAGCAACTTAATGACACTTCCAACATTGTTTGCAAGAGAAGGAAACTTCCTGGCTCACACCTGGATGTCTGGAAACTTCTGAGACTTCGTTCGAAAGATAATATTTTTATCATGCCATTGTTTTCAGCTGCAGCATCCGTCCTTGAGAAAGAGATGGAAACTCCAACAAAAGATGCGTTCAGGAATATTGAGTGGCCCCGGAATGCCAAAAATACAGACAATCGCATTCTTCAACTACCTCTAAATGAGAGGAGTTTCAGTTCAGAATCTCTCAAAGAAATGAGCAATAAGACTCCTTTGATCCCAGAAGAGGGAATTTCTCCAGCAGTTGAATCCACCGGGCATCCTTATCGCAGTCCAACTCTTTTGGAGGAGTATCCGTTAGATAACTTGGAAATTCGAGCAGATCATGGTTTCGACCCTACTGATGAAGACCAAAGCTGTTTGAATGCTAATGAAGAATCTCTCAAAGAAATGAACAATAAAACTCCTTCGAGGCTAGCAGAGGGAATTTCTCCAGCAGTTGAATCCATCGGGTTTCTTTATCGTAGTTCTACTCCTTTGGAGGATTATCCGTTAGATAACTTAGAAGTTCGAGCAGATCATGGCTTCGACCCTACTGATGAAGACCTAAACTGTTTGAATGCTGATGGAGAATCACCAGGCCTTCGCGATAAATTTATAGTTGAAAACTTGTCTGCCCGAACAAGGGCTGTAGCAAACTATCTTAAAGACAACACTCCAGTAGCTGCGTCAGATGCATCTGGGCGTGTTTGCTTGAACACTATTCTGGAAAACAGGACTAGGAAGCAATGCTCTAGAATGTTCTTTGAAACATTGGTTTTGAAGAGCTGCGGGTTAGTCAATGTTGAGCAAAAAGAAGCCTATGGCGATATTCTAATAAGTCCCACTCCATCGCTCTTATCTACCAAAATTTGAAAGTAGGTTTCTCTGTTTTGTACAAGGTAGATGTAACTTTGTAAACTTTTCTCATTTTGTTGCTCATGTAAATTGCCCTGTAAACTTGTTTATATTTAATGGGAGTTCATTGTGGTGGCATCTACTTGCTGTAATTAATTTAATGTCTTCATTGTAGTGGTATGAATGAAAAAATAGGTCAAAAGGAGCTCTTTGGTGTGAGGTCAAGAAGCAATTGTATGCTTACAAGGTGATGCTATTTGCATGTAATTGTTTGTGTGATATGGTCTTTAAAATTATCACCAAATTGTTGAGAAAGGTGGCACCATTATATAAATTATTGATGGGATCAACCCTTAGAAGTAGTAATGCTCATTGAAGAAGAAGCAATGACTTTGTAAGTCATTGATGCTGAAATGATGTCTCTTCCATTGAGCATAAATTCATGATCTAATCACTAAATTAAAATAAAATATATTAAAACATTGATTTAAAAATTTATGTAAAAATAAGATATTTATCCTAAATTAACATTTTGTATTTTTGCAGTAATACACAAAATTTCTCTATTGTAGCT

Network for GWHGAAEX015956

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04825.12	Rad21_Rec8_N	1	102	2.60E-31
PF04824.15	Rad21_Rec8	620	668	2.10E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06670	SCC1, MCD1, RAD21	Cell cycle	map04110
K06670	SCC1, MCD1, RAD21	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	84.020
SRP064423	SRR2545915	Juvenile tuber	70.410
SRP108465	SRR5643513	five period of Gastrodia elata	42.240
	SRR5643514	five period of Gastrodia elata	37.910
	SRR5643515	five period of Gastrodia elata	34.630
	SRR5643524	five period of Gastrodia elata	38.780
	SRR5643525	five period of Gastrodia elata	38.880
	SRR5643528	five period of Gastrodia elata	38.990
	SRR5643658	five period of Gastrodia elata	43.780
	SRR5643659	five period of Gastrodia elata	33.310
	SRR5643660	five period of Gastrodia elata	38.940
	SRR5643661	five period of Gastrodia elata	34.990
	SRR5643662	five period of Gastrodia elata	37.140
	SRR5643663	five period of Gastrodia elata	39.460
	SRR5643664	five period of Gastrodia elata	39.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	64.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	47.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.050
SRP279888	Gastro	Gastrodia elata tuber	59.58
	Juven	Juvenile tuber	48.02
	Mother_Gastro	Mother tuber of Gastrodia elata	58.95
	Mother_Juven	Mother tuber of Juvenile	43.50