Gene detail

Detail information of GWHGAAEX015957/evm.TU.scaffold_71.70_evm.TU.scaffold_71.69

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1901	2.00E-163	Uncharacterized high-glucose-regulated protein
nr	gi\|672132070\|ref\|XP_008789611.1\|	0	PREDICTED: YTH domain-containing family protein 2-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|A9LNK9\|CPSF_ARATH	3.00E-11	30-kDa cleavage and polyadenylation specificity factor 30 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|M0SL27\|M0SL27_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P04600_001}
TAIR	AT3G13060	2.00E-163	evolutionarily conserved C-terminal region 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000074	2494857	2583649	-

Transcript Sequence
>GWHTAAEX015957 CTTTGACTCATCCGGCTTCGAGATTTCGTAATTAGGAAAGATTGTAAACCCTTGAAAGAGAGTGCTCGAATCTCAGATCCTGCGAATGACGCGGTGTTAGTGTGGGAACAATTACGGAGGAGCAGAGGAAGAATTTTCTCTCTGAACGTCTCCCTTGCTCTCCATCTCTCTCCGTTTTTCTAGACTGAGATCTTTGTTTTGCTAATGGAGACTGCTGAACCAGGGCCAGATCGAATCGATTCAGCCCTATCGTTAAGCTCATCCGTAGATACTGCTGATAATTCCTTTAGTAGGGAGAGCTTGAAAGAGCAGCTGCTTTCTGGTAAAGATGAGAAAAAGCTGCATAATGATATTTCGCATGACTCACATCCCATTGATCCATTAAAAGATGCATCTTTGGGATCTTTGAATGCCAGTGGAGATCGTGGTACAGTTTATTCACCGAATATATATGCTCCACAGGCACATGCATTTGCTTATGGAGGCTATGAGAATACTACTGGTGAATGGGAGGAGTATATGCATCACTTTATGCATGCAGATAGTGTGGAACCTAGGTCAACAGGCATTTACACCGAGAACCAATCTGTTATGTTTCACCCAGGCTATGGGTACAATCCCCAGATGCCGTATGGGCCATATTCTCCAGTAACAACACCTTTACCTGTTTCTGGGAGAGATGGCCAGCTTTACTCCCCTCAACATTTTCCTTTTACAGGCCCATATTATCATCAACCAGCTGCATCAAGCATGTCATATCTGCATGCTCCAACGCCAATATCTCAAGCTGATTTGACCGTGCCACTTGAGCAACAAGGTGCTTTTCTCTCCAACCTGTGTTCCACCAGCATTTCTTTGGGACCAACATCTGCTTACCATATCCCCTTTAGTTCTTTTGATTGGTTAAAATCTTCAGATGTGACAGGGTCTCTGACTCCATTTCTTTCACCAGCAGCTTCACCTCAACCTATAGGTGCGGTTAGCTCGTTTGCCCATGGCATGATGCCTTTATCTCCTGGAATGGTATCTCAGCAGCAGAGAGCTTTCTATGGTTTTGGATCCTCAATTAATTCCTATGATCAAGGGTATTTTCATGGTGGAATGTATCATCATGGAAGTAATTTTGGAGGATCTATTCCCAGCTTAGGGAATAATGGTCGCAGTTTGATTACAATTGATAAAGGTAGGAGACGTGGAAAGGGAAATACTTCCTTGTGCAACACTTGCAATGACTTTCTTAATGAGCAAAACCGAGGTCCTCGTGCTGCCAGACCAAAGAGTGCAAGCATTGACCATGGCATGGCAGCTGATGGCAAAAACAACAATGTAACTCCAGGTGTTAATCGTGAATTATACAATAGGCCTGATTTTGCTGCGGACTATAAGGATGCAAAACTCTTCATAATAAAATCTTACAGCGAGGACAACGTTCACAAGAGTATCAAGTATGGTGTTTGGGCCAGCACTGCTAATGGAAACAAGAAACTGGATGCTGCTTATCATGAAGCAAAGGAAAAAGGAGATATTTGTCCGGTTTTCTTGTTTTTCTCTGTGAATGCCAGCGCTCAGTTCTGTGGTGTTGCTGAGATGATTGGGCCAGTTGATTTTGATAGTAGTGTGGACTATTGGCAGCAAGACAAGTGGAGTGGCCAGTTCCCTGTGAAATGGCATATCATAAAGGATGCACCTAACAATCTGTTTCGGCATATTATTCTTGAGAATAATGATAATAAACCGGTCACCAACAGCAGAGACACCCAGGAGGTAAAGCTTGAGCAGGGTCTGGAGATGCTAAGCATCTTCAAGAAATACGATTCCGATATGTCAATCCTCGACGACTTTGGGTTCTATGAGGATCGGCAGAAGGCAATGCAGGAGAGGAAAGCTAGGCAGCTCCAGCAACAGCGGCAGATGTGCCCCCCGTTGGATTCGATGGCTGACGGGAGGCAGGCTCCAGGCTCAAGATCCGCCGATTTGATGACCCAGATCTCAAAGAGCTTTGGCCAGGCCGTCAGGCTCGAAAATATTCCAAATGTTGAGGGCGCAGTGTCTGATAAAAGCAGCATTGCTGCTGCTGCTGCTGCTGCTATATTGGAGGACCAGAAGAAGCCTGCTTCTTCTTTAGCAGCAGCATAGAGCTTCAATACTTCCCAGTCAAGGTCTGTGTACAGTATTTATTATAGGCTGCCCAGCCATCCAGTGGTGTAACCATAATTTTTATTTTTCATTTTTATTACCTGTTTTTTAATTTTAAACTGCAAGAGTTTGGAGCTGTTGCTTCATTTATATTATTATTTGTAAAGTTCCAGTTATAAGAAGCTGGGCAATAAGTACCCCTCTTCTTACCACCAGTGTTTCTATTTGAATTCCTAGTTCAAAACTATCCTTTTTTTTCCTTCTTTCCTGACATCTCTAATGTTAACTTTGAGAACAAATGTGCTTTTATGCTGTTCTATAAAATGTCAAGCTTAAGTTTAATTGCCGAA

Network for GWHGAAEX015957

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04146.14	YTH	397	534	1.10E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	49.230
SRP064423	SRR2545915	Juvenile tuber	43.870
SRP108465	SRR5643513	five period of Gastrodia elata	40.980
	SRR5643514	five period of Gastrodia elata	41.460
	SRR5643515	five period of Gastrodia elata	39.260
	SRR5643524	five period of Gastrodia elata	40.610
	SRR5643525	five period of Gastrodia elata	60.370
	SRR5643528	five period of Gastrodia elata	62.580
	SRR5643658	five period of Gastrodia elata	65.690
	SRR5643659	five period of Gastrodia elata	33.890
	SRR5643660	five period of Gastrodia elata	31.510
	SRR5643661	five period of Gastrodia elata	30.750
	SRR5643662	five period of Gastrodia elata	30.820
	SRR5643663	five period of Gastrodia elata	30.650
	SRR5643664	five period of Gastrodia elata	29.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	36.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.890
SRP279888	Gastro	Gastrodia elata tuber	35.16
	Juven	Juvenile tuber	47.74
	Mother_Gastro	Mother tuber of Gastrodia elata	48.55
	Mother_Juven	Mother tuber of Juvenile	55.09