Gene detail

Detail information of GWHGAAEX015959/evm.TU.scaffold_71.73

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743812478\|ref\|XP_010929423.1\|	PREDICTED: glucan endo-1,3-beta-glucosidase 6-like [Elaeis guineensis]
Swissprot	tr\|Q93Z08\|E136_ARATH	Glucan endo-1,3-beta-glucosidase 6 (Precursor)
trEMBL	tr\|M0SC03\|M0SC03_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P05350_001}
TAIR	AT5G58090	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000074	2689401	2696289	-

Transcript Sequence
>GWHTAAEX015959 CTTCTTCTTCTTCTTCTTCCTCAATAGCTGTGTTTATTATTAGTTATCTTATTCCACTGCCCTAATCAATCCCAAGGCCAACCTCAAGCTTTCTATTTTTCTTGTATTTTTAAGTAAAAACAAGTTTTTCTTGTCATCGAAATAGGAGGGTTTTTGGCTCCTAGTTGGGATAGGCCCTAAAACCCTATAACTTGAGCTCTTGTTTAAGGAGAGATATGGGAAGGTGGTTGCATTTGAAGAAGTCGACGGTGTTGTGTTGGGTGGTGATGGTGGGGGTGGCAAGTGGGATTGGGGTGAACTGGGGGACTCAGACAAGCCACTTGCTTCCGCCGAGCACGGTGGTGCAGATGCTGAAGAACGACGGATTCCAGCAGGTGAAGCTTTTCGATGCAGAGGAAGGGAGCATGAATGCGCTCAGGAGGAGCGGGATCGAGGTGATGGTAGGGATACCCAATGACATGTTGGAGATGCTGGCGACGAGCGCTCGGGCAGCCGAGAAGTGGGTGTCGCAGAACGTCTCTGACTACCTCAATGATGAAGTCAACATAAGGTACGTTGCAGTTGGGAATGAGCCCTTCCTCACAACTTTCAATGGCAGCTATATCGGCATCACTCTACCTGCAGTCCAGAACATCCAAAGAGCCCTTGCAGATGCAGATCTGAGCAACAGGGTGAAGGTCACCGTACCCCTCAACGCCGATGTATACCAATCGGCGAGCGACCGACCTTCCGATGGCGATTTCCGCCCTGACATCCATGATCTTATGCTCAATATTACTCGATTCCTGAACGACAACGGAGCTCCCTTCATCGTCAACATATACCCCTTCATCAGCCTTTACAACAACCCTAATTTTCCAGTCGACTTTGCCTTCTTCGACGGGACTTCATCTCCCGTCGTCGACGGCACCATAACATACACAAACATGTTCGACGCCAATTACGACACGCTCATACGGGCTCTGCAGAAGAGCGGTTTCGGAAATCTTCCCGTCATCGTGGGGGAAATCGGGTGGCCGACCGACGGAGACATCAACGCGAATCTTCAGCTCGCTCAGAAGTTCAATCAGGGAATCATGGCCCGCATATCTTCCGGGAAAGGGACTCCGCTGAGGCCCGGGCCAATCAACGCGTACCTCTTCAGCCTGATCGACGAAGACCAGAAGAGCGTCATGCCGGGGAATTTCGAAAGGCATTGGGGAATCTACACCTTCGACGGCTTGCCCAAGTATCAATTAAATCTCGGAAAGACGAACAATAGCCTCGTTAGGGCAAAGAATGTGAGGTACCTTGAAAAAAAATGGTGCGTGTTCAATCCCTCGGCTAGCCTTGATGATGCGAATGTTGCGCCGAGCGTCAGCTATGCGTGCGCGAACGCGGACTGCACCAGCCTCGGATTCAGGACTACTTGCGGCAACTTGGATGCGAGGGGCAACATCTCTTACGCTTTCAACAGCTACTACCAGATGAATGATCAGATCAACGAAGCCTGCGGTTTCGATAATCTGGCCGTCATCACGAATATGGATCCTTCCACTTCGACGTGCAGATTTCAGATCATGATCCAGACTGATTCTGGATCTTTTCCGAGATTCAGTTTTTTTGGAGATGGGAGTTTCTTCTTCTCGTGGTGCTTCCTTTTGGCGCATCTTCTTCATCATCATGCCTGGTTTTAATCACATTTGACGCTCACATTGCGAAGCAAGAAAGGAGGAGACCTTATCTATTACTGTATAGCGAGAGTTTAGGCATAGAATAAAAAACAAAATTGACAGAAAATGAGCAGAAGTGTTATTCTATTAAAGATTTCAAGCTTTAATTTTGATGTCATGGATATAGTGAGACATCTTCAAATGCTTCCTTACTAAAGCTATTGGAAGACATTCCAACTTTAAGATTTAAATTTATTTGACTTGGAAATAGTCTATGTTTACCTAGCATTTTAAGTGCTTTCTCTAGTTGCTC

Network for GWHGAAEX015959

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module12

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.17	Glyco_hydro_17	25	342	1.50E-75
PF07983.12	X8	362	432	6.80E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19893	GN5_6	Metabolic pathways	map01100
K19893	GN5_6	Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.690
SRP064423	SRR2545915	Juvenile tuber	4.610
SRP108465	SRR5643513	five period of Gastrodia elata	12.980
	SRR5643514	five period of Gastrodia elata	16.340
	SRR5643515	five period of Gastrodia elata	17.760
	SRR5643524	five period of Gastrodia elata	18.150
	SRR5643525	five period of Gastrodia elata	10.210
	SRR5643528	five period of Gastrodia elata	16.050
	SRR5643658	five period of Gastrodia elata	7.840
	SRR5643659	five period of Gastrodia elata	4.410
	SRR5643660	five period of Gastrodia elata	4.370
	SRR5643661	five period of Gastrodia elata	7.000
	SRR5643662	five period of Gastrodia elata	6.110
	SRR5643663	five period of Gastrodia elata	4.380
	SRR5643664	five period of Gastrodia elata	5.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.140
SRP279888	Gastro	Gastrodia elata tuber	6.40
	Juven	Juvenile tuber	6.34
	Mother_Gastro	Mother tuber of Gastrodia elata	32.14
	Mother_Juven	Mother tuber of Juvenile	13.57