Detail information of GWHGAAEX015960/evm.TU.scaffold_71.74


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG05295.00E-10Protein geranylgeranyltransferase type II, alpha subunit
nrgi|672131686|ref|XP_008789408.1|3.28E-122PREDICTED: protein prenyltransferase alpha subunit repeat-containing protein 1-B [Phoenix dactylifera]
Swissprottr|Q9LX33|FNTA_ARATH9.00E-07Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
trEMBLtr|F6H609|F6H609_VITVI4.00E-102Putative uncharacterized protein {ECO:0000313|EMBL:CCB47648.1}
TAIR72903035.00E-10Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007427295332816467-
Transcript Sequence

Network for GWHGAAEX015960

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01239.21PPTA1732009.00E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0018342Biological Processprotein prenylation
GO:0008318Molecular Functionprotein prenyltransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms58.040
SRR2545915Juvenile tuber41.470
SRP108465SRR5643513five period of Gastrodia elata15.990
SRR5643514five period of Gastrodia elata13.870
SRR5643515five period of Gastrodia elata15.450
SRR5643524five period of Gastrodia elata13.410
SRR5643525five period of Gastrodia elata18.920
SRR5643528five period of Gastrodia elata14.380
SRR5643658five period of Gastrodia elata14.330
SRR5643659five period of Gastrodia elata22.720
SRR5643660five period of Gastrodia elata28.550
SRR5643661five period of Gastrodia elata25.180
SRR5643662five period of Gastrodia elata22.470
SRR5643663five period of Gastrodia elata21.990
SRR5643664five period of Gastrodia elata26.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.960
SRR6049655Rhizomagastrodiae_C368-T10_good_119.460
SRR6049656Rhizomagastrodiae_C368-T07_good_125.300
SRR6049657Rhizomagastrodiae_C368-T07_good_132.770
SRR6049658Rhizomagastrodiae_C368-T04_good_127.790
SRR6049659Rhizomagastrodiae_C368-T04_good_130.720
SRR6049660Rhizomagastrodiae_C368-T01_good_127.390
SRR6049661Rhizomagastrodiae_C368-T04_good_127.440
SRR6049662Rhizomagastrodiae_C368-T01_good_117.680
SRR6049663Rhizomagastrodiae_C368-T01_good_121.680
SRR6049664Rhizomagastrodiae_C368-T10_good_119.870
SRR6049665Rhizomagastrodiae_C368-T10_good_119.870
SRP279888GastroGastrodia elata tuber 28.66
JuvenJuvenile tuber30.24
Mother_GastroMother tuber of Gastrodia elata 23.81
Mother_JuvenMother tuber of Juvenile 26.90