Detail information of GWHGAAEX015961/evm.TU.scaffold_71.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220926268|ref|YP_002501570.1| | 2.00E-28 | heme peroxidase [Methylobacterium nodulans ORS 2060] |
| nr | gi|384407025|gb|AFH89624.1| | 2.69E-172 | allene oxide synthase [Cymbidium ensifolium] |
| Swissprot | tr|P48417|CP74_LINUS | 2.00E-141 | Allene oxide synthase, chloroplastic (Precursor) |
| trEMBL | tr|I0DHH0|I0DHH0_CYMEN | 1.00E-172 | Allene oxide synthase {ECO:0000313|EMBL:AFH89624.1} |
| TAIR | AT5G42650 | 3.00E-140 | allene oxide synthase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000074 | 2816488 | 2832877 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015961
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00067.21 | p450 | 429 | 588 | 1.50E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP74A |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01723 | AOS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0005506 | Molecular Function | iron ion binding |
| GO:0020037 | Molecular Function | heme binding |
| GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.040 |
| SRR2545915 | Juvenile tuber | 0.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.980 |
| SRR5643514 | five period of Gastrodia elata | 1.690 | |
| SRR5643515 | five period of Gastrodia elata | 3.550 | |
| SRR5643524 | five period of Gastrodia elata | 2.410 | |
| SRR5643525 | five period of Gastrodia elata | 0.430 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.060 | |
| SRR5643659 | five period of Gastrodia elata | 0.190 | |
| SRR5643660 | five period of Gastrodia elata | 0.030 | |
| SRR5643661 | five period of Gastrodia elata | 0.170 | |
| SRR5643662 | five period of Gastrodia elata | 0.030 | |
| SRR5643663 | five period of Gastrodia elata | 0.050 | |
| SRR5643664 | five period of Gastrodia elata | 0.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.280 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 49.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 49.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.20 |
| Juven | Juvenile tuber | 1.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.15 | |
| Mother_Juven | Mother tuber of Juvenile | 0.26 |