Detail information of GWHGAAEX015962/evm.TU.scaffold_71.76
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672119714|ref|XP_008783105.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Phoenix dactylifera] |
| Swissprot | tr|Q9FWA6|PP207_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g02330 |
| trEMBL | tr|Q0IVR4|Q0IVR4_ORYSJ | 0 | Os10g0558600 protein {ECO:0000313|EMBL:BAF27201.2} |
| TAIR | AT3G02330 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000074 | 2890991 | 2893843 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015962
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 70 | 95 | 0.0099 |
| PF01535.19 | PPR | 98 | 124 | 7.60E-06 |
| PF13041.5 | PPR_2 | 127 | 173 | 5.50E-10 |
| PF01535.19 | PPR | 231 | 258 | 5.30E-06 |
| PF01535.19 | PPR | 337 | 362 | 0.0042 |
| PF01535.19 | PPR | 408 | 432 | 0.04 |
| PF13041.5 | PPR_2 | 437 | 484 | 4.00E-11 |
| PF01535.19 | PPR | 512 | 533 | 0.044 |
| PF13041.5 | PPR_2 | 538 | 585 | 1.40E-10 |
| PF13041.5 | PPR_2 | 639 | 685 | 1.50E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.700 |
| SRR2545915 | Juvenile tuber | 1.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.850 |
| SRR5643514 | five period of Gastrodia elata | 2.320 | |
| SRR5643515 | five period of Gastrodia elata | 1.690 | |
| SRR5643524 | five period of Gastrodia elata | 2.550 | |
| SRR5643525 | five period of Gastrodia elata | 1.390 | |
| SRR5643528 | five period of Gastrodia elata | 0.460 | |
| SRR5643658 | five period of Gastrodia elata | 0.770 | |
| SRR5643659 | five period of Gastrodia elata | 2.680 | |
| SRR5643660 | five period of Gastrodia elata | 2.820 | |
| SRR5643661 | five period of Gastrodia elata | 4.130 | |
| SRR5643662 | five period of Gastrodia elata | 2.650 | |
| SRR5643663 | five period of Gastrodia elata | 2.540 | |
| SRR5643664 | five period of Gastrodia elata | 3.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.31 |
| Juven | Juvenile tuber | 2.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.42 | |
| Mother_Juven | Mother tuber of Juvenile | 1.01 |