Detail information of GWHGAAEX015963/evm.TU.scaffold_71.77


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16099.00E-57Protein involved in mRNA turnover and stability
nrgi|743772024|ref|XP_010916308.1|2.86E-99PREDICTED: uncharacterized protein LOC105041158 isoform X1 [Elaeis guineensis]
Swissprottr|F4JKK0|SUD1_ARATH3.00E-10Probable E3 ubiquitin ligase SUD1
trEMBLtr|A0A061EGA0|A0A061EGA0_THECC4.00E-93RING/FYVE/PHD zinc finger superfamily protein {ECO:0000313|EMBL:EOY04045.1}
TAIRAT5G380709.00E-57RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007429391602952701+
Transcript Sequence

Network for GWHGAAEX015963

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.6RINGv601059.60E-13
PF12428.7DUF36751112306.70E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.100
SRR2545915Juvenile tuber13.790
SRP108465SRR5643513five period of Gastrodia elata9.650
SRR5643514five period of Gastrodia elata9.230
SRR5643515five period of Gastrodia elata9.820
SRR5643524five period of Gastrodia elata9.310
SRR5643525five period of Gastrodia elata12.280
SRR5643528five period of Gastrodia elata12.540
SRR5643658five period of Gastrodia elata15.990
SRR5643659five period of Gastrodia elata8.070
SRR5643660five period of Gastrodia elata9.750
SRR5643661five period of Gastrodia elata8.000
SRR5643662five period of Gastrodia elata9.480
SRR5643663five period of Gastrodia elata8.180
SRR5643664five period of Gastrodia elata8.380
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.950
SRR6049655Rhizomagastrodiae_C368-T10_good_115.310
SRR6049656Rhizomagastrodiae_C368-T07_good_19.020
SRR6049657Rhizomagastrodiae_C368-T07_good_18.880
SRR6049658Rhizomagastrodiae_C368-T04_good_19.360
SRR6049659Rhizomagastrodiae_C368-T04_good_112.750
SRR6049660Rhizomagastrodiae_C368-T01_good_18.050
SRR6049661Rhizomagastrodiae_C368-T04_good_19.150
SRR6049662Rhizomagastrodiae_C368-T01_good_16.860
SRR6049663Rhizomagastrodiae_C368-T01_good_17.970
SRR6049664Rhizomagastrodiae_C368-T10_good_17.220
SRR6049665Rhizomagastrodiae_C368-T10_good_17.220
SRP279888GastroGastrodia elata tuber 8.95
JuvenJuvenile tuber13.48
Mother_GastroMother tuber of Gastrodia elata 16.35
Mother_JuvenMother tuber of Juvenile 11.97