Detail information of GWHGAAEX015966/evm.TU.scaffold_71.84_evm.TU.scaffold_71.85
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269839232|ref|YP_003323924.1| | 1.00E-121 | GHMP kinase [Thermobaculum terrenum ATCC BAA-798] |
| KOG | KOG0631 | 0 | Galactokinase |
| nr | gi|672163188|ref|XP_008801431.1| | 0 | PREDICTED: L-arabinokinase-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|O23461|ARAK_ARATH | 0 | L-arabinokinase |
| trEMBL | tr|M0RKQ6|M0RKQ6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P23310_001} |
| TAIR | AT4G16130 | 0 | arabinose kinase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000074 | 3086210 | 3217299 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015966
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13528.5 | Glyco_trans_1_3 | 22 | 148 | 3.00E-08 |
| PF10509.8 | GalKase_gal_bdg | 492 | 535 | 1.30E-05 |
| PF00288.25 | GHMP_kinases_N | 634 | 700 | 1.90E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12446 | E2.7.1.46 | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005534 | Molecular Function | galactose binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.240 |
| SRR2545915 | Juvenile tuber | 13.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.990 |
| SRR5643514 | five period of Gastrodia elata | 13.230 | |
| SRR5643515 | five period of Gastrodia elata | 19.050 | |
| SRR5643524 | five period of Gastrodia elata | 13.380 | |
| SRR5643525 | five period of Gastrodia elata | 11.090 | |
| SRR5643528 | five period of Gastrodia elata | 10.780 | |
| SRR5643658 | five period of Gastrodia elata | 9.050 | |
| SRR5643659 | five period of Gastrodia elata | 12.590 | |
| SRR5643660 | five period of Gastrodia elata | 12.410 | |
| SRR5643661 | five period of Gastrodia elata | 14.750 | |
| SRR5643662 | five period of Gastrodia elata | 9.530 | |
| SRR5643663 | five period of Gastrodia elata | 11.840 | |
| SRR5643664 | five period of Gastrodia elata | 9.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.68 |
| Juven | Juvenile tuber | 12.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.60 | |
| Mother_Juven | Mother tuber of Juvenile | 12.14 |