Detail information of GWHGAAEX015969/evm.TU.scaffold_71.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434387453|ref|YP_007098064.1| | 2.00E-146 | ATP-dependent DNA helicase RecG [Chamaesiphon minutus PCC 6605] |
| KOG | KOG0344 | 0 | ATP-dependent RNA helicase |
| nr | gi|743838817|ref|XP_010936813.1| | 0 | PREDICTED: uncharacterized protein LOC105056344 [Elaeis guineensis] |
| Swissprot | tr|Q84W89|RH37_ARATH | 6.00E-06 | DEAD-box ATP-dependent RNA helicase 37 |
| trEMBL | tr|F6HFI2|F6HFI2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB50831.1} |
| TAIR | AT2G01440 | 0 | DEAD/DEAH box RNA helicase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000074 | 3290202 | 3383360 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015969
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 472 | 636 | 2.40E-14 |
| PF00271.30 | Helicase_C | 688 | 795 | 8.00E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03655 | recG | Homologous recombination | map03440 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006310 | Biological Process | DNA recombination |
| GO:0006281 | Biological Process | DNA repair |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003678 | Molecular Function | DNA helicase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.570 |
| SRR2545915 | Juvenile tuber | 10.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.790 |
| SRR5643514 | five period of Gastrodia elata | 11.770 | |
| SRR5643515 | five period of Gastrodia elata | 10.880 | |
| SRR5643524 | five period of Gastrodia elata | 12.610 | |
| SRR5643525 | five period of Gastrodia elata | 11.890 | |
| SRR5643528 | five period of Gastrodia elata | 10.000 | |
| SRR5643658 | five period of Gastrodia elata | 13.920 | |
| SRR5643659 | five period of Gastrodia elata | 9.810 | |
| SRR5643660 | five period of Gastrodia elata | 8.640 | |
| SRR5643661 | five period of Gastrodia elata | 8.890 | |
| SRR5643662 | five period of Gastrodia elata | 9.190 | |
| SRR5643663 | five period of Gastrodia elata | 9.430 | |
| SRR5643664 | five period of Gastrodia elata | 9.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.31 |
| Juven | Juvenile tuber | 18.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.39 | |
| Mother_Juven | Mother tuber of Juvenile | 12.67 |