Detail information of GWHGAAEX015973/evm.TU.scaffold_71.96


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08007.00E-144FOG: Predicted E3 ubiquitin ligase
nrgi|743769456|ref|XP_010915017.1|0PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Elaeis guineensis]
Swissprottr|Q93Z92|RING4_ARATH8.00E-44E3 ubiquitin-protein ligase At4g11680
trEMBLtr|F6HX40|F6HX40_VITVI2.00E-156Putative uncharacterized protein {ECO:0000313|EMBL:CCB59510.1}
TAIRAT1G804007.00E-144RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007435807703609267-
Transcript Sequence

Network for GWHGAAEX015973

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_23573991.10E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms43.620
SRR2545915Juvenile tuber31.210
SRP108465SRR5643513five period of Gastrodia elata36.600
SRR5643514five period of Gastrodia elata40.350
SRR5643515five period of Gastrodia elata38.950
SRR5643524five period of Gastrodia elata37.560
SRR5643525five period of Gastrodia elata51.390
SRR5643528five period of Gastrodia elata53.230
SRR5643658five period of Gastrodia elata46.210
SRR5643659five period of Gastrodia elata24.710
SRR5643660five period of Gastrodia elata25.580
SRR5643661five period of Gastrodia elata27.390
SRR5643662five period of Gastrodia elata23.160
SRR5643663five period of Gastrodia elata26.830
SRR5643664five period of Gastrodia elata24.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.250
SRR6049655Rhizomagastrodiae_C368-T10_good_133.380
SRR6049656Rhizomagastrodiae_C368-T07_good_132.850
SRR6049657Rhizomagastrodiae_C368-T07_good_134.190
SRR6049658Rhizomagastrodiae_C368-T04_good_131.590
SRR6049659Rhizomagastrodiae_C368-T04_good_137.120
SRR6049660Rhizomagastrodiae_C368-T01_good_129.570
SRR6049661Rhizomagastrodiae_C368-T04_good_128.630
SRR6049662Rhizomagastrodiae_C368-T01_good_130.140
SRR6049663Rhizomagastrodiae_C368-T01_good_127.910
SRR6049664Rhizomagastrodiae_C368-T10_good_147.310
SRR6049665Rhizomagastrodiae_C368-T10_good_147.310
SRP279888GastroGastrodia elata tuber 24.62
JuvenJuvenile tuber26.21
Mother_GastroMother tuber of Gastrodia elata 62.70
Mother_JuvenMother tuber of Juvenile 58.40