Detail information of GWHGAAEX015974/evm.TU.scaffold_71.97
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|436834990|ref|YP_007320206.1| | 8.00E-25 | Acyl-ACP thioesterase [Fibrella aestuarina BUZ 2] |
| nr | gi|343963206|gb|AEM72519.1| | 0 | acyl-ACP thioesterase FatB1 [Cocos nucifera] |
| Swissprot | tr|Q9SQI3|FATB_GOSHI | 0 | Palmitoyl-acyl carrier protein thioesterase, chloroplastic (Precursor) |
| trEMBL | tr|G3ESU6|G3ESU6_COCNU | 0 | Acyl-acyl carrier protein thioesterase FatB1 {ECO:0000313|EMBL:AGJ84409.1} |
| TAIR | AT1G08510 | 6.00E-177 | fatty acyl-ACP thioesterases B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000074 | 3747273 | 3751617 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015974
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12590.7 | Acyl-thio_N | 1 | 125 | 4.40E-52 |
| PF01643.16 | Acyl-ACP_TE | 136 | 400 | 1.10E-78 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10781 | FATB | Metabolic pathways | map01100 |
| Fatty acid metabolism | map01212 | ||
| Fatty acid biosynthesis | map00061 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006633 | Biological Process | fatty acid biosynthetic process |
| GO:0016790 | Molecular Function | thiolester hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 48.220 |
| SRR2545915 | Juvenile tuber | 50.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 85.520 |
| SRR5643514 | five period of Gastrodia elata | 91.200 | |
| SRR5643515 | five period of Gastrodia elata | 122.550 | |
| SRR5643524 | five period of Gastrodia elata | 101.440 | |
| SRR5643525 | five period of Gastrodia elata | 110.310 | |
| SRR5643528 | five period of Gastrodia elata | 335.710 | |
| SRR5643658 | five period of Gastrodia elata | 144.380 | |
| SRR5643659 | five period of Gastrodia elata | 62.620 | |
| SRR5643660 | five period of Gastrodia elata | 58.080 | |
| SRR5643661 | five period of Gastrodia elata | 59.610 | |
| SRR5643662 | five period of Gastrodia elata | 51.500 | |
| SRR5643663 | five period of Gastrodia elata | 42.960 | |
| SRR5643664 | five period of Gastrodia elata | 38.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 64.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 74.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 72.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 57.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 65.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 61.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 60.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 63.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 91.900 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 76.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 82.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 82.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 42.04 |
| Juven | Juvenile tuber | 26.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 501.56 | |
| Mother_Juven | Mother tuber of Juvenile | 331.42 |