Gene detail

Detail information of GWHGAAEX015975/evm.TU.scaffold_71.98

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428224959\|ref\|YP_007109056.1\|	4.00E-72	L-aspartate aminotransferase [Geitlerinema sp. PCC 7407]
KOG	KOG0257	0	Kynurenine aminotransferase, glutamine transaminase K
nr	gi\|695042590\|ref\|XP_009408957.1\|	0	PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase [Musa acuminata subsp. malaccensis]
Swissprot	tr\|E9L7A5\|PAT_PETHY	1.00E-35	Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase (Precursor)
trEMBL	tr\|M0TG79\|M0TG79_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P09910_001}
TAIR	AT1G80360	0	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000074	3838092	3885615	+

Transcript Sequence
>GWHTAAEX015975 AAAAAGTGCTAGACTGCCGTTGGTAGCGAGCGTGTGCATGCCTAAGAAAAACGACAGAAGCAGTCGTTGCCAGCAAAAGTATACTTGCAATAAAAAATAGGCAACAATTCCACGGCCAAGCAGGGGATAGATAGATATAGATCGACTTCCTGCGCGATTTGGAGGGAGATATGTACATTTTTAATTTGAGTTAGAATCCTAGTTGATTTGGTTACTTGGGAAATGCTCTCATCTCTTTGCATGGATTCTTTATCGCTTTCGTCTCCCTTTTTTGTGTTCATGCTTTGCTTTTAGATCAGGAGAGTTCGATTCTAATCAATCAGTAACGATCATTAATTAATAGAACTATTAGTTGGAATTCATTTAATCTCTTGGAATTTGTGAGTTGTTGCTTTGCGGTAGTTGTCAAGGCCTTTGGGTTTCGATCAGTCGGTTTTTCATCTCAGTTAGGGATTTGTTGTCACCCCATATTGTGCCCTCTTTTTCTGAGATGACGAATATAGCAAAGCTCGCGAGAAGGGCTCTGCAAACTGAAACCCCTGTGATGGTTCAGATCCAGGAATTGATGCGCGGAGCAAAAGACGCCATTTCACTTGCGCAGGGAGTAGTTTACTGGCAGCCTCCCGAGAAAGCTCTGAAAAAGGTGCAAGACATTGTATGGGATCCTTCAACTAGTCATTATGGTGCAGATGAAGGTATTTCAGAATTGAGATTGGCATTGGTTGAGAAGTTGCGCCGGGAAAACAAGTTGACAAAGTCTTCAGTAATGGTGACAGCTGGTGCCAATCAGGCATTTGTGAACCTTGTCTTGACATTATGTGATCCCGACGACTCTGTTGTTATGTTCACACCATATTACTTTAATGCTTACATGTCATTTCAGATGACTGGCATTAACAACATACTGATTGGTCCAAGCAATCAAAAAACACTGCATCCTGATGTAGAATGGTTGGATAAGTTGCTTTCAGAGAAGGGTACAAAGCCAGCTCCAAAGCTTGTTACAGTGGTGAATCCAGGCAACCCTAGTGGGAGTTATATCCCACCATTACTACTCCAGAGAATTTCAGATCTTTGTAAACGTGTTGGAGCATGGCTTGTTGTTGATAATACATATGAGTATTTCATGTATGATGGGTTAGAGCATTCTTGTATTGAAGATGGCCATGTCGTCAATGTTTTTTCATTCTCCAAAGCCTACGGAATGATGGGGTGGCGCGTCGGTTATATAGCATACCCGGCCGAGGCAGAGGGCTTCGGCGCTCAGCTCCTGAAAGTGCAGGACAACATACCCATCTGTGCTTCAATAATAGGGCAGCGGCTGGCGCTTTATTCGCTGGAGGCCGGCCCAGAATGGATAAAGGAGAGAGTGCAGGGGCTGGTGAAGAACAGAGAGATGCTGAAGAGGGCTCTCTCGCCTCTTGGGGAGGAGTCCGTCAGAGGCGGAGAGGGCGCCATCTACCTCTGGGCGAAGCTGCCCGATGGCTACTCCGACGATTTCGAGGTGGTCCAGTGGCTCGCGAGAAAGCACGGCGTCGTCGTTATTCCTGGGAGCGCGAGCGGCGGGCCCGGCTACATCAGGATCTCTTTCGGAGGGCTGAGAGAGGCCGACTGCCGAGTTGCCGCCGAGAGGCTGAACAAGGGGTTGGAGGAGCTGGTGAGAGATGGGATGGTTTAATTCTTGTTTTTTTGTTAATATTATCTTTACTATTATTATCATTACTATTATCATTAATACTTTTATTTGTTATGATTATCATTTTTTTAAGAAATAATTGTGCACTGAAAGTACTTCAGACTTCAATTTATATGATTGTTTGTAATATCTGCTCAGATGACGAACATATATATATGAATAGCTGATTTTATATTTTTTAATGAAAGAACGAACTGGCGC

Network for GWHGAAEX015975

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.20	Aminotran_1_2	31	382	4.30E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00837	ISS1, VAS1	Metabolic pathways	map01100
		Cysteine and methionine metabolism	map00270
		Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0009058	Biological Process	biosynthetic process
GO:0003824	Molecular Function	catalytic activity
GO:0030170	Molecular Function	pyridoxal phosphate binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.240
SRP064423	SRR2545915	Juvenile tuber	27.920
SRP108465	SRR5643513	five period of Gastrodia elata	42.520
	SRR5643514	five period of Gastrodia elata	47.900
	SRR5643515	five period of Gastrodia elata	40.390
	SRR5643524	five period of Gastrodia elata	49.200
	SRR5643525	five period of Gastrodia elata	50.830
	SRR5643528	five period of Gastrodia elata	50.140
	SRR5643658	five period of Gastrodia elata	61.330
	SRR5643659	five period of Gastrodia elata	10.890
	SRR5643660	five period of Gastrodia elata	11.920
	SRR5643661	five period of Gastrodia elata	12.030
	SRR5643662	five period of Gastrodia elata	11.150
	SRR5643663	five period of Gastrodia elata	14.620
	SRR5643664	five period of Gastrodia elata	11.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	41.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	47.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.220
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	54.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	46.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	71.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	71.440
SRP279888	Gastro	Gastrodia elata tuber	18.67
	Juven	Juvenile tuber	24.82
	Mother_Gastro	Mother tuber of Gastrodia elata	85.51
	Mother_Juven	Mother tuber of Juvenile	55.48