Detail information of GWHGAAEX015976/evm.TU.scaffold_71.101
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|470179656|ref|YP_007565700.1| | 8.00E-27 | putative oxidoreductase [Ilumatobacter coccineus YM16-304] |
| KOG | KOG0143 | 5.00E-87 | Iron/ascorbate family oxidoreductases |
| nr | gi|672168154|ref|XP_008804067.1| | 3.71E-117 | PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Phoenix dactylifera] |
| Swissprot | tr|O24648|G3OX_PEA | 3.00E-95 | Gibberellin 3-beta-dioxygenase 1 |
| trEMBL | tr|B2NI88|B2NI88_ALLFI | 3.00E-107 | Gibberellin 3-oxidase {ECO:0000313|EMBL:BAG32267.1} |
| TAIR | AT1G15550 | 5.00E-87 | gibberellin 3-oxidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000074 | 3989410 | 3990552 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015976
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 40 | 133 | 4.70E-15 |
| PF03171.19 | 2OG-FeII_Oxy | 183 | 287 | 2.40E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04124 | E1.14.11.15 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Diterpenoid biosynthesis | map00904 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.650 |
| SRR5643514 | five period of Gastrodia elata | 2.720 | |
| SRR5643515 | five period of Gastrodia elata | 1.150 | |
| SRR5643524 | five period of Gastrodia elata | 2.450 | |
| SRR5643525 | five period of Gastrodia elata | 0.160 | |
| SRR5643528 | five period of Gastrodia elata | 0.170 | |
| SRR5643658 | five period of Gastrodia elata | 0.060 | |
| SRR5643659 | five period of Gastrodia elata | 0.070 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.780 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 1.52 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.07 |