Detail information of GWHGAAEX015978/evm.TU.scaffold_71.106
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186681693|ref|YP_001864889.1| | 1.00E-35 | hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102] |
| KOG | KOG0266 | 0 | WD40 repeat-containing protein |
| nr | gi|743754749|ref|XP_010915657.1| | 0 | PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9FUY2|LEUNG_ARATH | 0 | Transcriptional corepressor LEUNIG |
| trEMBL | tr|W9SY16|W9SY16_9ROSA | 0 | Transcriptional corepressor LEUNIG {ECO:0000313|EMBL:EXC32583.1} |
| TAIR | AT4G32551 | 0 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000074 | 4306402 | 4318384 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015978
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08513.10 | LisH | 10 | 35 | 8.20E-08 |
| PF00400.31 | WD40 | 601 | 627 | 0.0073 |
| PF00400.31 | WD40 | 633 | 670 | 2.20E-06 |
| PF00400.31 | WD40 | 677 | 713 | 0.0064 |
| PF00400.31 | WD40 | 760 | 794 | 2.70E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LUG |
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 80.230 |
| SRR2545915 | Juvenile tuber | 80.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 89.200 |
| SRR5643514 | five period of Gastrodia elata | 113.180 | |
| SRR5643515 | five period of Gastrodia elata | 82.810 | |
| SRR5643524 | five period of Gastrodia elata | 97.690 | |
| SRR5643525 | five period of Gastrodia elata | 72.390 | |
| SRR5643528 | five period of Gastrodia elata | 75.420 | |
| SRR5643658 | five period of Gastrodia elata | 70.520 | |
| SRR5643659 | five period of Gastrodia elata | 85.980 | |
| SRR5643660 | five period of Gastrodia elata | 96.830 | |
| SRR5643661 | five period of Gastrodia elata | 91.640 | |
| SRR5643662 | five period of Gastrodia elata | 81.020 | |
| SRR5643663 | five period of Gastrodia elata | 96.050 | |
| SRR5643664 | five period of Gastrodia elata | 105.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 99.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 121.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 99.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 91.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 88.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 85.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 94.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 82.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 105.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 99.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 110.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 110.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 121.96 |
| Juven | Juvenile tuber | 178.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 101.69 | |
| Mother_Juven | Mother tuber of Juvenile | 149.25 |