Gene detail

Detail information of GWHGAAEX015979/evm.TU.scaffold_71.107

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158335614\|ref\|YP_001516786.1\|	9.00E-33	ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|672192803\|ref\|XP_008775867.1\|	0	PREDICTED: pleiotropic drug resistance protein TUR2-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q8GU88\|PDR7_ORYSJ	0	Putative pleiotropic drug resistance protein 7
trEMBL	tr\|K3YPA4\|K3YPA4_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si016096m}
TAIR	AT1G15520	0	pleiotropic drug resistance 12

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000074	4329129	4339360	+

Transcript Sequence
>GWHTAAEX015979 AAAAAAAGCATTCACTTATGTACTTTCAGTAAACAATTGCTTTCTTTTCCTGCATTAATATGCATCCCAATCCATCCAATCCATTATGCGAGATATCCATATATAGTAGGTAGCTACTCCTTGCGACAGTACTAACACTTTGGTGACAGAAGTTGATACGTACTTAAAAAACCTTTCTTGCATTTCTTACACAAAACATACGGGACAAACTTCTATGTCAATCTTATTAGGGGTGTCAAAATTTGGGAGAACTCATCAATAAACTTTTGGTGATATCTTGTGAGCCACAAGAAACTCTGCATTTCCATTACTATCACCAATTGCAGCAAATTTTTAATAGCACTGACCTTCAGATTTACACGAATTCTACCTGTAGTGATAATAATGTGTCCCTAAAAGCTACTGATTCAAATTCAAAAAATTTAGCATATAGTTGGCGACCGTTTCCAAAACTATACATAATTGCCTGGAGCCGTCACTAACTTCCATGCCTACCGCGTGATCCTTCTCCATTCAGCATATAAAAGCACGATTTGGGAAACCCAAAGAAAGTTCAAAAAATACACAGCGCGCTCTTTTTCCCCGTCTTCTTCTTCTTCCTCTACTTCAGCATCTCTCATCTGAATTCTTCCAGTAATTCTCAAGCTAGAAAAGCCAAAAAGGAAGCAGCTTGAGAGCAGGTGAGAGATGGAGGGCGCGAGAGGCAACTTGGCTGGCAGCCTACGACGAACAGGGTCGGTGTGGCTGGGAGGCAGCAGCAGCAGGGATGTGTTCTCAAGATCTTTGAGGGAGGAGGACGATGAAGAGGCCCTCAAGTGGGCAGCTCTTGAAAAGCTTCCCACCTATGACCGAATCAGAAAGGGAATCCTCCAGGGATCCATGGGAGGCAGAGAAGTAAGCATTGAGGAGCTTGTCCTGGCTGAGAGGAAAATGTTCATGGAGAGGCTTGTCAGAATTGCGGATGAAGACAATGAGAAGTTTTTGGAAAAGCTCAAGAATAGATTGGACAGAGTTGGGGTTGCGAATCCAACCATTGAGGTCAGGTTTGAGAACTTGGAAATTCATGCGGACGCTTATGTGGGGAACAGAGGAGTTCCCAATATTCTCAATTTCTTTACCAACCAGCTGGAGGCTCTGCTGAACACCTTACATATTCTGCCAAGTAGGAAGAGGCCGCTCACTATCCTTCATGGCATCAGTGGAATCATTAAACCGAACAGGATGACCTTGCTCTTAGGTCCCCCATCTTCAGGGAAAACCACTCTGCTTCTGGCGCTAGCAGGGAAGCTGAGCAAGAATCTAAAGGTGACGGGTAGTGTGGCTTACAATGGGCACGGTATGGATGAGTTTGTGCCCCAAAGAACCTCAGCTTATATTAGTCAGCATGATTTGCACATTGGAGAAATGACTGTCAGAGAAACGCTGGCTTTCTCTGCTAAATGTCAAGGCGTTGGATCCCGTTATGAAATGTTGACAGAGCTTTTAAGGAAGGAAAAGGCAGCTAACATTAAGCCAGATCCTGATATTGATATGTATATGAAGGTATTAGAACTGGATCTGATCTTCGCAAAATTTTTCAATATTCAGATTCTAGGATTGGACATCTGCGCTGATGCTCTGGTTGGAGATCATCTGATTAGGGGAATATCAGGAGGGCAGAAGAAAAGGCTGACAACAGGGGAGATGCTTGTTGGACCAGCGAGGGTACTCTTCATGGACGAGATATCGACTGGGCTTGACAGCTCAACGACCTACTCCATAGTGAACTCACTCCGGCAATCCATTCACATTCTGGGGGGCACGGCCTTGATAGCGCTGCTTCAGCCTGCTCCGGAGACGTATGACCTCTTCGACGACATTCTGCTGATCTCAGAAGGCCAAGTGGTGTACCAGGGGCCTCGAGAGAGCGTACTCGAGTTCTTCGAATCCATGGGCTTCAGATGCCCTGAGAGAAAAGGCGTAGCCGACTTCTTGCAGGAGGTCACATCGAAGATGGATCAGAGGCAGTACTGGGCGAGGAGGGACGAGCCTTACCGATTCGTCTCCGTCAACGAATTCGCCAATGCGTTTCTTTCGTTTCACGCCGGGAGAAAACTGGAGCAAGACCTTCGCAGCCCCTTCGACAAGACTAAGAACCACCCCGCCGCTCTCACCACGACTAGATACGGGGTCAGCAATACGGATATCTTCAAGGCTTGCTTCGATCGAGAGTATTTGCTGATGAAGAGGAACTCATTCGTCTACATGTTCAAAATATGCCAGCTAGTGCTGATAGCGTCGATAGCTATGACCGTCTTCCTTCGCACGAAGATGCACCATCGCGATACAGATGACGGAACTATCTATATGGGGGCGCTTTTCATCGGGCTTCAGACTGCTATGTTCAACGGATTTGCGGAGCTAACCATGAGCATTGTTAAGCTACCTGTCTTTTACAAACAGAGGGATCTCCTGTTCTTTCCGGCATGGGCTTATGCTTTGCCTACTTGGATTCTAAAAATTCCCATATCTTTTCTCGAGTGCGCCATTTACATTAGCTTGACTTATTATGTGATCGGCTTCGACCCGAATGTGCAAAGATTTTTTAGACAGTTTTTGCTGTTCTCGTTGATCAGTCAAATGGCGTCTGGTCTTTTCCGAGTTGTGGCTGCCCTTGGCAGGAACATGACAGTGGCAAACTCTTTTGGCTCCTTTGTCATGATGGTTGTGCTAGTTCTCGGTGGATTCGTCATATCTCGAAAAAGCATAAAGAAGTTTTGGATATGGGGTTACTGGTCATCGCCCTTGATGTACGCTCAGAATGCTTTGTCCGCAAATGAATTTCTTGGGCACACATGGAAGAAAATTGTTGATCCAAGTATCAGCAACCAGACTTTAGGAGAGCTGGTCATTGAATCCAGAGGCTTATTTGCTGAATCGAAGTGGGTTTGGATAGGTGTGATAGCATTGATCGGCTATGTTCTCGTCTTCAATGTCATATATATTGCTGCCCTCACCTTTCTGGATCCATTTGGGAAAGGTCAGGCAGTCATATCTGAGGAGGCTCTGAGTGAGAAAGAATCTAATAGAACAGGAACGGCTACCAATCTCTCATCCAGAGGAAGAAGCTCCCAAGCTTCAGAAGGTGAAATCAGCACAGAAGCTGATCCTAACAGGAAGCGTGGAATGGTTCTTCCCTTTGAACCGCTATCGTTGACATTTGACAATGTGAAGTACTCAGTGGACATGCCACCGGAAATGAAATCGCAAGGTGTTCAAGAGGATCGGCTGCTGCTGCTCAAAGGCGTCAGCGGGGCTTTCAGACCGGGGGTTCTAACGGCATTGATGGGAGTCAGTGGAGCGGGAAAGACAACCCTTATGGATGTGCTTGCGGGAAGGAAGACCGGCGGGTATATAGATGGAAACATCAGCATTTCAGGCTACCCTAAGAAGCAAGAAACATTCGCCCGAATTTCAGGTTACTGTGAGCAGAATGACATCCACTCTCCTCATGTGACCGTCTACGAATCTCTCGTCTACTCCGCGTGGCTGAGGTTGCCGTCTGAAGTGAACTCTGATTCAAGAAAGATGTTCGTCGAGGAGGTTATGGAATTAGTTGAGCTGACTCCTTTAAGAAACGCGCTGGTTGGATTGCCTGGAGTCAATGGACTGTCTACCGAACAAAGGAAGAGGCTTACAATTGCTGTTGAGCTTGTCGCCAATCCTTCCATTATCTTCATGGACGAACCAACCTCTGGATTAGATGCCCGAGCAGCAGCAATTGTCATGAGAGCCGTAAGGAACACAGTGGACACAGGCAGAACTGTCGTGTGCACGATTCATCAGCCCAGCATTGACATTTTTGAGGCATTTGATGAGCTTTTCCTAATGAAACGTGGTGGAGAGGAGATATATGTCGGTCCACTGGGGCGCAATTCTACTGAACTCATCAGATACTTTGAGGCCATAAATGGAGTAAGCAAGATAAAAGATGGTTACAATCCTGCGACATGGATGCTGGAGGTGACAAACTTGGCTCAGGAAGAAATTCTGGGGGTTAATTTCGCTGAAACATACAAGAATTCTGATCTCTTCAGGAGGAACCAAACCCTGATTAGCGAGCTAAGCACTCCGGCGCCTGGAACGAAAGATCTCTACTTCCCCACCAAATTCTCGCAGCCTTTCTTCTCCCAATGTCTCGCCTGCTTCTGGAAACAGTACAAATCCTACTGGCGCAATCCCTCCTACGGCGCCATTCGCCTCTTCTTCACAACAGTAGTCGCTCTCACCTTCGGCACCATCTTCTGGAGACTCGGATCCAAAACAAACACGCAGCAGGACCTCTTCAACGCCTTGGGGTCGATGCACTCTGCCGTCTTTTTCATCGGGATGCAGAACTCGCAGACATTGCAGCCTGTGGTGGACTTCGAGCGGACGGTGTTCTACAGGGAGAAAGCTGCGGGAATGTACTCACCTCTGCCTTACGCCTTCGCTCAGATCGCCATCGAAATACCTTACACGCTCTTCCAGGCAGTTTTGTACGGGGTCTTGGTCTACAGCATGATAAATTTCGACTGGACGGCGGCCAAATTCTTCTGGTACCTCTTCTTCACATTCTGCACCTTCCTCTACTTCACCTTCTTCGGAATGATGGCGATCTCGTTGACCCCCAACTCGGACATTGCCGCCGTAGTCGCAACCGCCTTTTATATTATATGGAATCTCTTCTCAGGCTTCGTCATCCCCCGCCCTAGGATTCCGATCTGGTGGAGATGGTACTTCTGGGCGTGCCCCGTTTCTTGGACGCTGTACGGCCTCATCGCCTCGCAGTTTGGAGATATAGAGGTGGAGATGATCGGTACGGGAATGACGGTGAAGCAGTTTATAAAACATTACTTCGGCTACAAGCACGATTTCTTGGGGGCGGTCGCCATCGCGGAAATCGGATTTCCGCTTCTCTTTGCTGTCGTCTTCGCGTTTGCGATCAAGATGCTCAACTTCCAGAGGAGGTGA

Network for GWHGAAEX015979

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14510.5	ABC_trans_N	91	142	7.90E-09
PF00005.26	ABC_tran	167	346	4.20E-11
PF01061.23	ABC2_membrane	501	712	2.10E-41
PF08370.10	PDR_assoc	717	782	3.50E-24
PF00005.26	ABC_tran	864	1016	1.90E-19
PF01061.23	ABC2_membrane	1162	1375	5.80E-57

Protein Sequence

>GWHPAAEX015979
MEGARGNLAGSLRRTGSVWLGGSSSRDVFSRSLREEDDEEALKWAALEKLPTYDRIRKGILQGSMGGREVSIEELVLAERKMFMERLVRIADEDNEKFLEKLKNRLDRVGVANPTIEVRFENLEIHADAYVGNRGVPNILNFFTNQLEALLNTLHILPSRKRPLTILHGISGIIKPNRMTLLLGPPSSGKTTLLLALAGKLSKNLKVTGSVAYNGHGMDEFVPQRTSAYISQHDLHIGEMTVRETLAFSAKCQGVGSRYEMLTELLRKEKAANIKPDPDIDMYMKVLELDLIFAKFFNIQILGLDICADALVGDHLIRGISGGQKKRLTTGEMLVGPARVLFMDEISTGLDSSTTYSIVNSLRQSIHILGGTALIALLQPAPETYDLFDDILLISEGQVVYQGPRESVLEFFESMGFRCPERKGVADFLQEVTSKMDQRQYWARRDEPYRFVSVNEFANAFLSFHAGRKLEQDLRSPFDKTKNHPAALTTTRYGVSNTDIFKACFDREYLLMKRNSFVYMFKICQLVLIASIAMTVFLRTKMHHRDTDDGTIYMGALFIGLQTAMFNGFAELTMSIVKLPVFYKQRDLLFFPAWAYALPTWILKIPISFLECAIYISLTYYVIGFDPNVQRFFRQFLLFSLISQMASGLFRVVAALGRNMTVANSFGSFVMMVVLVLGGFVISRKSIKKFWIWGYWSSPLMYAQNALSANEFLGHTWKKIVDPSISNQTLGELVIESRGLFAESKWVWIGVIALIGYVLVFNVIYIAALTFLDPFGKGQAVISEEALSEKESNRTGTATNLSSRGRSSQASEGEISTEADPNRKRGMVLPFEPLSLTFDNVKYSVDMPPEMKSQGVQEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNISISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVYSAWLRLPSEVNSDSRKMFVEEVMELVELTPLRNALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRNSTELIRYFEAINGVSKIKDGYNPATWMLEVTNLAQEEILGVNFAETYKNSDLFRRNQTLISELSTPAPGTKDLYFPTKFSQPFFSQCLACFWKQYKSYWRNPSYGAIRLFFTTVVALTFGTIFWRLGSKTNTQQDLFNALGSMHSAVFFIGMQNSQTLQPVVDFERTVFYREKAAGMYSPLPYAFAQIAIEIPYTLFQAVLYGVLVYSMINFDWTAAKFFWYLFFTFCTFLYFTFFGMMAISLTPNSDIAAVVATAFYIIWNLFSGFVIPRPRIPIWWRWYFWACPVSWTLYGLIASQFGDIEVEMIGTGMTVKQFIKHYFGYKHDFLGAVAIAEIGFPLLFAVVFAFAIKMLNFQRR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.260
SRP064423	SRR2545915	Juvenile tuber	0.490
SRP108465	SRR5643513	five period of Gastrodia elata	0.040
	SRR5643514	five period of Gastrodia elata	0.140
	SRR5643515	five period of Gastrodia elata	0.210
	SRR5643524	five period of Gastrodia elata	0.110
	SRR5643525	five period of Gastrodia elata	0.640
	SRR5643528	five period of Gastrodia elata	1.260
	SRR5643658	five period of Gastrodia elata	0.690
	SRR5643659	five period of Gastrodia elata	0.570
	SRR5643660	five period of Gastrodia elata	0.640
	SRR5643661	five period of Gastrodia elata	0.360
	SRR5643662	five period of Gastrodia elata	0.210
	SRR5643663	five period of Gastrodia elata	0.430
	SRR5643664	five period of Gastrodia elata	0.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.130
SRP279888	Gastro	Gastrodia elata tuber	0.13
	Juven	Juvenile tuber	0.17
	Mother_Gastro	Mother tuber of Gastrodia elata	0.30
	Mother_Juven	Mother tuber of Juvenile	0.42