Detail information of GWHGAAEX015995/evm.TU.scaffold_72.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|310824394|ref|YP_003956752.1| | 3.00E-153 | acyl-CoA dehydrogenase [Stigmatella aurantiaca DW4/3-1] |
| KOG | KOG0135 | 0 | Pristanoyl-CoA/acyl-CoA oxidase |
| nr | gi|1575556|gb|AAB67883.1| | 0 | acyl-CoA oxidase homolog [Phalaenopsis hybrid cultivar] |
| Swissprot | tr|O64894|ACOX2_CUCMA | 0 | Acyl-coenzyme A oxidase, peroxisomal (Precursor) |
| trEMBL | tr|P93482|P93482_9ASPA | 0 | Acyl-coenzyme A oxidase {ECO:0000256|PIRNR:PIRNR000168} |
| TAIR | AT5G65110 | 0 | acyl-CoA oxidase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 776246 | 784725 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015995
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02770.18 | Acyl-CoA_dh_M | 183 | 300 | 7.90E-15 |
| PF00441.23 | Acyl-CoA_dh_1 | 332 | 489 | 9.60E-08 |
| PF01756.18 | ACOX | 537 | 681 | 1.10E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006631 | Biological Process | fatty acid metabolic process |
| GO:0006635 | Biological Process | fatty acid beta-oxidation |
| GO:0003997 | Molecular Function | acyl-CoA oxidase activity |
| GO:0071949 | Molecular Function | FAD binding |
| GO:0016627 | Molecular Function | oxidoreductase activity, acting on the CH-CH group of donors |
| GO:0005777 | Cellular Component | peroxisome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.280 |
| SRR2545915 | Juvenile tuber | 17.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.790 |
| SRR5643514 | five period of Gastrodia elata | 46.970 | |
| SRR5643515 | five period of Gastrodia elata | 41.600 | |
| SRR5643524 | five period of Gastrodia elata | 47.150 | |
| SRR5643525 | five period of Gastrodia elata | 188.150 | |
| SRR5643528 | five period of Gastrodia elata | 202.070 | |
| SRR5643658 | five period of Gastrodia elata | 268.360 | |
| SRR5643659 | five period of Gastrodia elata | 32.530 | |
| SRR5643660 | five period of Gastrodia elata | 35.220 | |
| SRR5643661 | five period of Gastrodia elata | 26.510 | |
| SRR5643662 | five period of Gastrodia elata | 65.180 | |
| SRR5643663 | five period of Gastrodia elata | 66.160 | |
| SRR5643664 | five period of Gastrodia elata | 78.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 37.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 39.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 33.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 46.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 51.830 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 62.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 72.70 |
| Juven | Juvenile tuber | 35.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 111.83 | |
| Mother_Juven | Mother tuber of Juvenile | 79.76 |