Detail information of GWHGAAEX015996/evm.TU.scaffold_72.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672176206|ref|XP_008808175.1|2.01E-79PREDICTED: ethylene-responsive transcription factor ERF060-like [Phoenix dactylifera]
Swissprottr|Q8H1E4|RAP24_ARATH1.00E-64Ethylene-responsive transcription factor RAP2-4
trEMBLtr|K4JFI7|K4JFI7_MAIZE1.00E-75AP2-EREBP-type transcription factor {ECO:0000313|EMBL:AFU81614.1} (Fragment)
TAIRAT1G780803.00E-64related to AP2 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000071975018976796+
Transcript Sequence

Network for GWHGAAEX015996

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module13

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00847.19AP21321802.20E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-ERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms37.300
SRR2545915Juvenile tuber39.740
SRP108465SRR5643513five period of Gastrodia elata61.940
SRR5643514five period of Gastrodia elata45.870
SRR5643515five period of Gastrodia elata122.000
SRR5643524five period of Gastrodia elata35.430
SRR5643525five period of Gastrodia elata130.000
SRR5643528five period of Gastrodia elata87.390
SRR5643658five period of Gastrodia elata65.790
SRR5643659five period of Gastrodia elata105.880
SRR5643660five period of Gastrodia elata30.040
SRR5643661five period of Gastrodia elata76.110
SRR5643662five period of Gastrodia elata119.070
SRR5643663five period of Gastrodia elata60.910
SRR5643664five period of Gastrodia elata190.030
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1139.070
SRR6049655Rhizomagastrodiae_C368-T10_good_1125.750
SRR6049656Rhizomagastrodiae_C368-T07_good_1110.040
SRR6049657Rhizomagastrodiae_C368-T07_good_1110.120
SRR6049658Rhizomagastrodiae_C368-T04_good_1102.970
SRR6049659Rhizomagastrodiae_C368-T04_good_1101.990
SRR6049660Rhizomagastrodiae_C368-T01_good_1154.700
SRR6049661Rhizomagastrodiae_C368-T04_good_1102.330
SRR6049662Rhizomagastrodiae_C368-T01_good_1119.520
SRR6049663Rhizomagastrodiae_C368-T01_good_1186.970
SRR6049664Rhizomagastrodiae_C368-T10_good_1104.500
SRR6049665Rhizomagastrodiae_C368-T10_good_1104.500
SRP279888GastroGastrodia elata tuber 43.55
JuvenJuvenile tuber31.38
Mother_GastroMother tuber of Gastrodia elata 130.47
Mother_JuvenMother tuber of Juvenile 43.39