Gene detail

Detail information of GWHGAAEX015998/evm.TU.scaffold_72.20

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|334145937\|ref\|YP_004508864.1\|	5.00E-11	leucine-rich protein [Porphyromonas gingivalis TDC60]
KOG	KOG0531	7.00E-117	Protein phosphatase 1, regulatory subunit, and related proteins
nr	gi\|672117396\|ref\|XP_008781882.1\|	3.56E-165	PREDICTED: uncharacterized protein LOC103701548 [Phoenix dactylifera]
Swissprot	tr\|F4IIU4\|AIR9_ARATH	3.00E-10	187-kDa microtubule-associated protein AIR9
trEMBL	tr\|M0RLE2\|M0RLE2_MUSAM	2.00E-158	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P25680_001}
TAIR	AT1G78230	7.00E-117	Outer arm dynein light chain 1 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000071	1027533	1094501	+

Transcript Sequence
>GWHTAAEX015998 CTTACTCTTAGAGGAACAGATTCATATCTTCTTAAGCTGTAGGTTTGCTATTAATTCAACATCTATCAGTTTCACATTCCCTCTTGATCACTTGAAGGCAATGTTTGCCTGTTTGCCAGTTTTGTTGGTCGGGAGGAAGAAGAAATTCAAGGAAGATGGTAAAAATGGAGGAAGCAATGGTGACCTTCGGGTTAAGCCGATTGATCTTTCCAGCCCTTCTACTGTGAAAGGATCCTCTGGCATTCCTAAAGTACAGAGCAGTGACAGCTTGGCAAGAGCAGAGTCTATTGGAGAGGCATCTAATGAGGGAGGATGCTCTGACTCAATAGATCTCCGATTCAATAGAGAATTGACATCCCGTGCTTTATATAAGGAGGAGGCAGTAAAAGAGATTGCTAGTGATCCTGGGATGGAGCAGGCAGCCTTTATGGAAGAGCCACCATTACTCAAGCGCTCCTGCTCAAACTTTGAGATAAAGCAGGCTAAGCGATGGATTAAGACCCAACTGAGGTCGAGCTCTTACAGCAACCTCCAAAACTTGCCAGGAAATGGCAGAGTAAGAATTAGCTATGAATCTCGTTTCAGTCCCTTGTCTACTGATCGTGTGATGCTGAAGCGATGGTCCTCAAGTCAGGTTCTTCCCTCCAGAAGCAGGAAGATATGGTGGAAGCTTTTCATTTGGAGTCATAGGAATCTGCACAAGCCTAAGCCTCCTCCAATAAAGTTCTCAGCTTTCATTTATCCCAAACAGAAGGATGGGTATTTATCTGACACCCACGAACCTGGCCTGAGGCTTGATAAAGGAAAGAAGAAAGCAATGGATTTTGGGGACCAATGGGTTGCATTCTCCTTAAGGTCTTCTCGCATGGACAGAGTAAGCGCTTGGGTGAACAGCCTTGAGGATTGCTCATTCTCTTCTGTTAATTTTGAAGGGGTTTCGGAGGGATTCGAAAATGAACCAACTTTCTCTGAAAAAAATTGTTGCAGCAGTAATCGCCACGCGGCAGAGGAAGTGGCGCAAGCCAACAATGTTGTTCAGTCACTAAACACTTTCTCATCAGTGGCGCATATCTCTGGAATTGGATTGAAGGTTATTCCTTCCATTTCAGCCGTTCTCTGCCTTCGATCCGTCAATCTCTCCGGAAACAGCATTGCTCACATAACAGCAGGATCGCTTCCAAAGAGCCTTCACACTCTGGACTTGTCTCGGAACAGAATATCGACGATTGAAGGCATCAGAGATCTTGAAAAGTTGAGGATTCTCAATCTGAGCTATAATCGAATCACAAGAATTGGTCATGGGCTATCCAGCTGCACCGTAATAAAAGAGCTGTACCTTGCCGGGAATAAGATCAGCAATGTGGAGGGGCTTCACCGTCTTCCAAAGCTCCTGGTGCTGGACCTCAGCTTCAATAAGATAACCACAAACAATGCAGTAGGCCAGCTTGTAGCAAACTACAGCTCTCTATTGGCCCTCGACCTCTTAGGCAATCCGATACTGACCAACGCAGGCGATGATCATCACATAAGAAGGGCGATTTCGAGTCTGCTGCCTCATGTGACATTTCTGAACAAGCAGCCTTTCAGGCCTCACAGAGGCCGGCAATTCGTGGCTGATACTGTAGCCAAAGCTGCCCTTCGAGGTGCGCCTCTGCGCTGCAGGAGGAGGTCATCAGCTTCTTGTTTCAGGGAAAGCTCTTTTAGGACCGGCAATAATGACAAGGGCAGGCTCTCAAATTCTGGCAGGAAAAATGGCTGA

Network for GWHGAAEX015998

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.5	LRR_8	341	395	1.20E-09
PF13516.5	LRR_6	428	442	0.82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.440
SRP064423	SRR2545915	Juvenile tuber	0.400
SRP108465	SRR5643513	five period of Gastrodia elata	0.090
	SRR5643514	five period of Gastrodia elata	0.170
	SRR5643515	five period of Gastrodia elata	0.380
	SRR5643524	five period of Gastrodia elata	0.080
	SRR5643525	five period of Gastrodia elata	2.240
	SRR5643528	five period of Gastrodia elata	1.290
	SRR5643658	five period of Gastrodia elata	1.450
	SRR5643659	five period of Gastrodia elata	0.190
	SRR5643660	five period of Gastrodia elata	0.200
	SRR5643661	five period of Gastrodia elata	0.620
	SRR5643662	five period of Gastrodia elata	0.360
	SRR5643663	five period of Gastrodia elata	0.190
	SRR5643664	five period of Gastrodia elata	0.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.850
SRP279888	Gastro	Gastrodia elata tuber	0.89
	Juven	Juvenile tuber	0.06
	Mother_Gastro	Mother tuber of Gastrodia elata	0.74
	Mother_Juven	Mother tuber of Juvenile	0.02