Gene detail

Detail information of GWHGAAEX015999/evm.TU.scaffold_72.21

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|334145937\|ref\|YP_004508864.1\|	6.00E-10	leucine-rich protein [Porphyromonas gingivalis TDC60]
KOG	KOG0531	6.00E-98	Protein phosphatase 1, regulatory subunit, and related proteins
nr	gi\|672117396\|ref\|XP_008781882.1\|	1.43E-141	PREDICTED: uncharacterized protein LOC103701548 [Phoenix dactylifera]
Swissprot	tr\|F4IIU4\|AIR9_ARATH	6.00E-08	187-kDa microtubule-associated protein AIR9
trEMBL	tr\|M0TGR0\|M0TGR0_MUSAM	5.00E-123	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P11720_001}
TAIR	AT1G78230	6.00E-98	Outer arm dynein light chain 1 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000071	1097417	1105229	-

Transcript Sequence
>GWHTAAEX015999 TGATCAAGCATTTTTGAGCTGAACATAAATGAACATGGCACTATAATGTTCGGCTTGATATGGAATCAAGCTTCAAATATGTGTTTGAGCTCATCTCATTAGCTTATTGATCAAGCCAAATCCAAGGCTCTTAACGAACCAAACCAAGCTATTTGTGAACAACAAGCTTTTTTGACAGCATTAGTTAAGATAGAAATCTCATATAAAGTTATCAAATAGTACTATTCATATTATGATAAAAAATTCTATATACCGGTGCATTCATTTGATATTGGAGGCTTTATCGTTTATAAAGAAATTTGTATTATATTTAGATCATCAAGTCTTGCAGCGCCTTAGTTCTCATTAGGATCATAGTGCAAAGTGGGTTGAAATTTTTCATGAGCGTAGAATTTTTTCAAGGGCGCATCATTTTCTTAAAATGCTGTACTAATACAAATTATACGTTTGGTAATGCACTTATTCAAATCGTCATACTATTGCAGAACATGCAAGTTAAAAGTTAATAGATTTTCTGACCTCAAAATAGAGTATAGAATCAATATGGATTTTAGAAAAGATTTATCACAACTTGAATTGTGATGACTTTATTATTCACAGAAACTTAAGGGTGGTTATATTTTAATAAAATATGATTGTTTATACTTGGCTGGTTCATAAATTGTATGCACGAGTAGCAGGTAAGTTAGATAGTAATAAAATTGCAGGAATGATTGTTAGGACAAGCTTGGCTGACAGGTCCACCAATACACACATTCATTTAAATAATTGCTGAGCATTGAGTCATTTCTAATGAGATTAAATCCATTTTAAAGATGCAACGAAAGGTTTGGGAAATGGACCCATAACGGTGTTGTGTATGGAATCTTCATACTTCGGTCAAAATTGGCGCCCATTTCGCAATGCCTATGGCCTGACCAACAACAAATTGCAGGAATGATCGAGGATAAATGTTATTGGCTTAGTAGTAAAAATAACGTCATGAATATTATCACCAAAGCTGAATAAGTCATGACCCAGTTCGATAGGTATAGGGAAACAGAGGTCAGGAGGCGAAAAATATAGACTTAATATTTAAACACTTGGCCAAAATAAATCAAATATCATCTAAACAATATAAAGAGCCAACTAAGTGTTCACGAACATTTAAATCTAATAGCATTTAATGTCTTTTATTGCACACTAAAGGAGTGCAATATAATATAAAAGAGAGTTGAATGAAAAGATATTAGAACAAAGGTATTGAGCACGATAATGGGCATAGGTCAAATAGTGAATTTGTCAGCAATTTAACCCTGATTTGAAAAAGATTTAAAATAAAAATATTACAACAATTAATTATAAATTCTGTCTAATAATTATCAAGGAAAAATGTGAATGCTTGCATTTAATTATTATAATGCAGATAAGCTAAAAAATGTATAGACTAATATCAAAATGCTATCTACTGAGAGTGAAGTAATAGTTTATTTGGGAAAAATCATTGTATAGATAAATAGTTGTAGCCTACATAAATAAAATTCTAAATATACATGATATTCATTTAATATTTTTTATTATCACTTGTATTGTGAATCAAAATACCATGTAGTGCAACTGAGCGAAGCACCACCTAATAGACTCACAGTTAGAGGCCCTTCCAAAGGGAGGATCTTATCATAGGGAAGATTTCACCATGGAAATAATACACATGCAAGTCTTTGCACGTATACTTATATAAAGCACATGTTGCATCATAATAGTGTGGGCATTCAAATCTTAGCATATTCATAACTTTGCCAATTACATTGACTTTTCCTGATTTGATAAAGTTCATTTTCATAGCCATGGTAAATTCGTATAAAATTTGCTAAATAACCTATGCAACATAATGTGACATGAAAAGTTCATTTCTATGTTGGTGATTATGTTGTAATTAAGATATCAATAATTCCTCTTAATTCTATTTTGCTATATATATATGTATATGAATTCTGATCAATCTAAAAGTAAGTAACCGATACTTGGGGGTATAATCTTATTGAATTTTATGTTACATTTATAGTATCTACCACAATATCTTAAATGCCAAAACTAACAATAATCAAGAAAGAAAAATAGATAATTATTAAAAAAATCACAATTATGCACTTTAATTTGAAGGTCTAGAAATCTAAAATGCTACTCTAGTGAGTGATCTTTCTGTCATGAGAATCAATCTAATTGAATAGTTTTTGGCTCCAAGTGTTTAAATATTAAATATATATTTTTCGCCTTTCGACCTCTATTTCTCGACACTTATTGGGCCTAGTCGTGACAGAATAAACAATTAAGAGCAGAGAGTAGAACACATGGTTATCCGCACTTTGTTCTTTCTGTATAAGTCATGAGAAGATGTTAGTATTGATATTTCTGGGATTACTATGCTCTCTTGGAAACTAATAGTTGATAGATTCTCTAAGATAGTTCATTTCACTTTATACTACAAATTTGTGATGCCTCATAGATCATTAAGTTATACTTTTAAAAGGTTGTAAATTGTATGGTATATCCAAATGATATTCTTGAATATGGACATTAAACTAATCAATTAATTTTGAATAATTTTTGGAAAAAAAAATGAAATGCTTTGAAATTCTTTGTGACATCGTTTAAAAATATGTGGACTAATAATATTAAAAATGAGTCTTGAGAATTTATTGCAACATTTGGCCATGAATCATACTTCTAAGTAAATTTGAGTTAGCATATATTTCATCTATTAATATGTATTAGCAGGAATTCATTTGAATTAATTACTGGTTTACTATATAAATACTTATTGACTTAGGGTTACTTGTTGAATTTAGGTCTAATAAGTTAGGTAGATTTTTATATAACACATGCATAGCATACATGATTACATTTGTAGAAAATTAAGTTCAACGTATGGCCAATATAAAATAAGTCACTTAAGCATTTGCGTAGATGAATCAGTCAAATTTATTATGTGCAAGAAGTATTTAGCATTCTCTTTAAGTTAATTAGTCCAACAATGCAAATTCTAATTAATTAATTTTAAATAAGCTTTTTTGAAGATATAGTTGTACTCATTTAAGAGGAAATTGTAATGATCTCAGTCTATTTGCTTCATTTTTGCTCTCCAACGCTTTCTTTGCTTTTATTAAGATTTTTTTTCCATAGCATACAACTCTTACATTTTATGTATCAAGCATCGACATTCTATGGTGATTTTCATGAATACCACTCAATTTTATTCTTTACACATGGGATTAAAAAAATTTTAAATTTATATTGCTGCCACCCAAATCTTATGATTGCATAAAAAGTGGCATCTCACTAAGGTTCTGTTATTCATTATAAGTAGATGAGATTTTTTTCATATAGTAGTACTATTAGGTGCTAATTTATATATAAGTATAATTGTTATGTATGAAAGTATAATAGATTCGAGGGTTGTGCTACTAATTATCACTTATATAGAATTTAAATCATTATAATTAAATCAATGCTATCATCTTTGTTTATTAATGTTTAAATAATGACATGAATCCATGAAACTTGTGATTATTTTTTTTGTTTAATAAATTTTAACATTTTATTGCTAAATATGCAAATTAATAATATTTTTGGGTATGCAAGTATTTGTTTTGTTATCTTGGTTTTGCATGCTACTATAGTTTATTAATTGCAGTGAAAACGAGTCATTCAACAATGTTTTTCTAGCAATATTACACACTACAAGTTCACTCTCAACTGGGGATGTAAATGATGAGCTGAGCAAGAGCAAGTTAAGACTATATATTCACTTTGTTGTGAGTTTTGTTTTAATTTGACTTGTGTTCATTTTTGTTCAAAAATCAAGTTCTCATGTTCAATTCAAGTTGCATTTAGTATGCTTTTGCTTTGCTAGAATTGTCTTTAATAATGCTTTTTTGTTCAATGTGTTATGTTAGTGTTCTCGGCTCTAGTTTGGCACAGAAGTATGATTTTATAATGAAATTATTATAGGCAAAATTTTAATGCAGTAACTTTATTTAACTAAAATTATATACACACTATCCTACAATAAATAAGTATAACGAAATTAATAATATTTGTTAATAAAATTTATTAAAAATTGAAAATTTTCTAGAACAATTCAAATTAAAAAAAATTCAAACAAATTAACTATTAGAATTTGATTGAAATATACATAAGAGTAACTTTATTTACAATTGCAAAAGCAGATAGTCGGATGAAACGATTTAGAACACAAGACTGGCCAGGCTCATATACAATGATTATTATTATTTTTTAAATCACTAAATTTTCAACAAAGCAAACTAATAAACATCAGAATACAACAGCCAGAGAGAGATGAGGCATACCTGAAATTCAGAAAAGTCACAGGTTTCACACAAAAATAAAAGCCTTATTAACATATATATCTCATTGCTATGCCCTCCATTTTTATGTATCAGCTCGCTGCTGGAGTTATTAAAACATATTTTTTAATACTATATAAGATATATTATATAATAATAAACTATTACATTCTCTTACTACAATACTAATTAATAAATAGTATTTGTAATTATAGTTTAATAATCAAGCTATTATTGAGCCAAACTCAATTGATTATGATATTGTTTGGGTATGGCTCAGTAAGTACTCAGTCTTCAGTCTCTAGCTTATCCATCATGCAAAATCTACACTCGTTAATAAGCCGAGTACATGCTATTTGCAAGTAATGAGCTTTGTTGACAGCACTATCCTCATTTTTTATATTTGAGATGGCACAATTTGGTGCTATCAAAATTTGCTTGAGTCTACATCTCATATATATTATTGTGTTCTCCTGAGTTTTTTTGTAGGTTTTACCTTCTTAAGAAATTGAAACTTCTTGGTCGTTTTGGTACTTTTTTAATAAATTTTCTGCTGAATAGTTCAGTGTCTATCACTACAATTTTAATGTTCTCTCCATCTATTTAGCTATTTTGATAGATTGGGGCTGTTTTGAGGAGGGTATAACAATTCAAGTTTAATTTACATCTTCATTCTATCATTCATATCACAGACATTGAACCCCAATTTTTAAGCACTCACGAGTTGAGTGTTTCTGCTGAATTAAAGGGATATCTAATTGAAATCAGCTAATGTTTTGGCCCTGTTCAAGGGATGAACTATATAAGTACCAGCTTTCTTGGTGGTACTAGTTTTCTGTTATTCTAGAAAGTTGTTTTGGGAATGTGATTGAACTCTCCAACATCACTAGATTACTTGTAGAAGAACCTAAGAAGAAGAGATTCAAGGTACTTTCTGAAAGGGGAAGGCGACAAATTAACCCCAAGGGATATCTTAAGCCTGCTATTGGTAGGCAGGAGGGAAGTAGCAAAGAAAGTTTTCAGATTAAACCTTCTAGTCTGGTCACGCTTTCCACTGAACATGACAAAAAAGAGCACTCTTTATCTGTTTCAACATTTCTCTCTATAGAGAATGGAACCTCTTTCATTCCCATAGAATCGGAAGATGGCAGCTTTATGAGACAAGAGTATACAATAGCAACAGTTTATGAGGAGCTTGGTGATAATACTGAAATTTACCCAATGAAGAGAGAATACTCTGACTTGGATCTGCAACCAAAAGGAGAAATTTTCTCTCATGGATCAAGCAATGACTTGGATAGCCATGCTTTGGAGAAAGAAACAAGTAGCGGTATTTCTGTTGAGGAAGCAATGATTCAAGGAGGGAACGTTAGGAACAACCCTACATGGTTGATGCAGACTGCGTTTATGAACTCTCCAGTGCTTACACGCTCGTGTTCAGACATTGAGATTTGGCAAATTAAACAATGGATCAACTTACGTGAGAGGTCAAGCTCTTGCAGTATTCTCAAAAACTTGTCAGGAATTGACAGAGTTCTTCCATCCCACTGCCAAATGATCTTGAGGAAACTTCTTCTTTTGAGACACAGGAATTTCCAGAAACTGAGATATCCCCAAAGGATAATTGCAGCTCTTGTTGCTTCAAATCAGAAGGGCGGGAATTTGACAGATTCCCATGAATCTGGCCAAAAATTTGAAGAATTGAGGAAAAAAGAGAACCAATCTGCTGCAATCTCATTAGGGACTTCTCAAATAGATAGAGTTAATTCATGGATAAGTAATCTTGATATTGATGATTTTTGTGATGTGGAAAAACAATGTGATAAACAAACGGCCGTCCTAACTCACATGGAGCTTGTAAATTCTTCTGAAAACAATATTTCTGACACTTATGGTTCTGCAACTGAGGTGGAAAAGGTGAACGATATTATTCAGTCCCTGAATTCGTTCTCTTCTGTAGCTCATTTTTGTTACCTCGGATTGAATACTGTTCCAACCATGTCGTCGGCCTTTCTCTGCCTTCGATCCGTTAATCTCAGTGGAAACAACATAGATAGCATTACTCCAGGATCTCTTCCCAAGAGTCTTCACACTCTGGATTTGGGCTGGAACAAGATTTCTACTATTGAAGGCCTCAAGGACCTCGAACGGTTGAGGGTTCTCAATCTTAGTCATAACCGGATCACTAGGATTAGTCATGGATTAGCAAACTGCACTCTAATAAAGGAGCTGTATCTTTCCGGTAATAAGATCAGTAATGTCGAAGGCCTTCACCGCATTCTAAAGCTTAGAGTGTTGGACCTCAGTTTCAACAAGATAATAACAGCCAAGGCATTAGGCCAGCTGGTTGCAAATCATGACTCTATTTTGGCTCTCAATCTCCAGGGCAATCCATTACAGCGCAACATCAGCGATGATCAGCTGAGAAAGGCTGTTTTGAGTCTTTTGCCACATGTTGTTTACCTGAATAAGCGACCTATCAAACCTGAAAGGGTTCGAGAAGTCGTGACTGAAAGTGTAGCTAAGGCTGCCCTTGGAGATACAGCGCGGAGCTCAAAAAGGAAGATGTCCAGAAGATTAAGCCAGGGTTTACGCTCATCAACCATTTGCAGGATTGGTGATATATCTTTAAGGGACAATTCATTAAGGACCATCAAGAATGGCAAGGGAAGACAACTTTTGGCAGGCAGGTAG

Network for GWHGAAEX015999

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.5	LRR_8	289	343	2.70E-10
PF13516.5	LRR_6	377	391	0.91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.140
SRP064423	SRR2545915	Juvenile tuber	8.060
SRP108465	SRR5643513	five period of Gastrodia elata	6.490
	SRR5643514	five period of Gastrodia elata	9.070
	SRR5643515	five period of Gastrodia elata	8.240
	SRR5643524	five period of Gastrodia elata	8.570
	SRR5643525	five period of Gastrodia elata	6.320
	SRR5643528	five period of Gastrodia elata	7.450
	SRR5643658	five period of Gastrodia elata	6.490
	SRR5643659	five period of Gastrodia elata	4.200
	SRR5643660	five period of Gastrodia elata	3.330
	SRR5643661	five period of Gastrodia elata	3.920
	SRR5643662	five period of Gastrodia elata	4.000
	SRR5643663	five period of Gastrodia elata	4.990
	SRR5643664	five period of Gastrodia elata	4.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.800
SRP279888	Gastro	Gastrodia elata tuber	5.79
	Juven	Juvenile tuber	8.79
	Mother_Gastro	Mother tuber of Gastrodia elata	11.12
	Mother_Juven	Mother tuber of Juvenile	13.07