Detail information of GWHGAAEX016001/evm.TU.scaffold_72.24


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16162.00E-41Protein involved in Snf1 protein kinase complex assembly
nrgi|719993716|ref|XP_010253963.1|6.68E-54PREDICTED: SNF1-related protein kinase regulatory subunit beta-3 [Nelumbo nucifera]
Swissprottr|Q9ZUU8|KINB3_ARATH6.00E-42SNF1-related protein kinase regulatory subunit beta-3
trEMBLtr|A0A067KJN3|A0A067KJN3_JATCU9.00E-51Uncharacterized protein {ECO:0000313|EMBL:KDP32475.1}
TAIRAT2G280602.00E-415'-AMP-activated protein kinase beta-2 subunit protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007113174101335835+
Transcript Sequence

Network for GWHGAAEX016001

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04739.14AMPKBI391095.60E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.780
SRR2545915Juvenile tuber8.800
SRP108465SRR5643513five period of Gastrodia elata19.090
SRR5643514five period of Gastrodia elata22.360
SRR5643515five period of Gastrodia elata16.690
SRR5643524five period of Gastrodia elata19.870
SRR5643525five period of Gastrodia elata15.830
SRR5643528five period of Gastrodia elata12.070
SRR5643658five period of Gastrodia elata15.880
SRR5643659five period of Gastrodia elata21.890
SRR5643660five period of Gastrodia elata18.200
SRR5643661five period of Gastrodia elata19.870
SRR5643662five period of Gastrodia elata25.740
SRR5643663five period of Gastrodia elata24.460
SRR5643664five period of Gastrodia elata18.840
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.700
SRR6049655Rhizomagastrodiae_C368-T10_good_140.760
SRR6049656Rhizomagastrodiae_C368-T07_good_122.350
SRR6049657Rhizomagastrodiae_C368-T07_good_118.530
SRR6049658Rhizomagastrodiae_C368-T04_good_117.660
SRR6049659Rhizomagastrodiae_C368-T04_good_113.430
SRR6049660Rhizomagastrodiae_C368-T01_good_121.070
SRR6049661Rhizomagastrodiae_C368-T04_good_117.550
SRR6049662Rhizomagastrodiae_C368-T01_good_125.980
SRR6049663Rhizomagastrodiae_C368-T01_good_123.020
SRR6049664Rhizomagastrodiae_C368-T10_good_127.250
SRR6049665Rhizomagastrodiae_C368-T10_good_127.250
SRP279888GastroGastrodia elata tuber 14.14
JuvenJuvenile tuber12.27
Mother_GastroMother tuber of Gastrodia elata 13.80
Mother_JuvenMother tuber of Juvenile 6.33