Detail information of GWHGAAEX016007/evm.TU.scaffold_72.34


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|170290634|ref|YP_001737450.1|4.00E-2130S ribosomal protein S6e [Candidatus Korarchaeum cryptofilum OPF8]
KOGKOG16462.00E-15540S ribosomal protein S6
nrgi|695066628|ref|XP_009380211.1|2.28E-167PREDICTED: 40S ribosomal protein S6 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9M3V8|RS6_ASPOF6.00E-16540S ribosomal protein S6
trEMBLtr|M0RJJ1|M0RJJ1_MUSAM9.00E-16840S ribosomal protein S6 {ECO:0000256|PIRNR:PIRNR002129}
TAIRAT5G103602.00E-155Ribosomal protein S6e

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007116308881637297-
Transcript Sequence

Network for GWHGAAEX016007

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01092.18Ribosomal_S6e11281.20E-59
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02991RP-S6e, RPS6 Ribosome map03010
Apelin signaling pathwaymap04371
HIF-1 signaling pathwaymap04066
PI3K-Akt signaling pathwaymap04151
mTOR signaling pathwaymap04150
Insulin signaling pathwaymap04910
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms295.930
SRR2545915Juvenile tuber353.980
SRP108465SRR5643513five period of Gastrodia elata360.420
SRR5643514five period of Gastrodia elata395.300
SRR5643515five period of Gastrodia elata338.780
SRR5643524five period of Gastrodia elata357.090
SRR5643525five period of Gastrodia elata171.900
SRR5643528five period of Gastrodia elata193.280
SRR5643658five period of Gastrodia elata156.700
SRR5643659five period of Gastrodia elata409.810
SRR5643660five period of Gastrodia elata374.720
SRR5643661five period of Gastrodia elata437.700
SRR5643662five period of Gastrodia elata398.240
SRR5643663five period of Gastrodia elata382.300
SRR5643664five period of Gastrodia elata402.220
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1523.760
SRR6049655Rhizomagastrodiae_C368-T10_good_1343.150
SRR6049656Rhizomagastrodiae_C368-T07_good_1605.720
SRR6049657Rhizomagastrodiae_C368-T07_good_1516.020
SRR6049658Rhizomagastrodiae_C368-T04_good_1634.470
SRR6049659Rhizomagastrodiae_C368-T04_good_1612.250
SRR6049660Rhizomagastrodiae_C368-T01_good_1658.170
SRR6049661Rhizomagastrodiae_C368-T04_good_1613.550
SRR6049662Rhizomagastrodiae_C368-T01_good_1691.130
SRR6049663Rhizomagastrodiae_C368-T01_good_1763.660
SRR6049664Rhizomagastrodiae_C368-T10_good_1591.410
SRR6049665Rhizomagastrodiae_C368-T10_good_1591.410
SRP279888GastroGastrodia elata tuber 436.58
JuvenJuvenile tuber442.97
Mother_GastroMother tuber of Gastrodia elata 171.84
Mother_JuvenMother tuber of Juvenile 199.10