Detail information of GWHGAAEX016014/evm.TU.scaffold_72.46


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17563.00E-81Histone 2A
nrgi|672198297|ref|XP_008777291.1|2.35E-84PREDICTED: histone H2AX [Phoenix dactylifera]
Swissprottr|O65759|H2AX_CICAR7.00E-84Histone H2AX
trEMBLtr|A0A0A0K7H2|A0A0A0K7H2_CUCSA1.00E-83Uncharacterized protein {ECO:0000313|EMBL:KGN44844.1}
TAIRAT1G546903.00E-81gamma histone variant H2AX

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007119000051900999+
Transcript Sequence

Network for GWHGAAEX016014

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone12923.50E-15
PF16211.4Histone_H2A_C951284.40E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0005634Cellular Componentnucleus
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms97.800
SRR2545915Juvenile tuber113.500
SRP108465SRR5643513five period of Gastrodia elata243.220
SRR5643514five period of Gastrodia elata273.960
SRR5643515five period of Gastrodia elata224.420
SRR5643524five period of Gastrodia elata226.810
SRR5643525five period of Gastrodia elata329.890
SRR5643528five period of Gastrodia elata213.020
SRR5643658five period of Gastrodia elata208.410
SRR5643659five period of Gastrodia elata215.620
SRR5643660five period of Gastrodia elata175.730
SRR5643661five period of Gastrodia elata234.410
SRR5643662five period of Gastrodia elata190.070
SRR5643663five period of Gastrodia elata187.180
SRR5643664five period of Gastrodia elata190.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1177.080
SRR6049655Rhizomagastrodiae_C368-T10_good_1118.110
SRR6049656Rhizomagastrodiae_C368-T07_good_1240.260
SRR6049657Rhizomagastrodiae_C368-T07_good_1184.640
SRR6049658Rhizomagastrodiae_C368-T04_good_1189.650
SRR6049659Rhizomagastrodiae_C368-T04_good_1163.340
SRR6049660Rhizomagastrodiae_C368-T01_good_1199.340
SRR6049661Rhizomagastrodiae_C368-T04_good_1207.210
SRR6049662Rhizomagastrodiae_C368-T01_good_1230.630
SRR6049663Rhizomagastrodiae_C368-T01_good_1203.980
SRR6049664Rhizomagastrodiae_C368-T10_good_1308.710
SRR6049665Rhizomagastrodiae_C368-T10_good_1308.710
SRP279888GastroGastrodia elata tuber 177.53
JuvenJuvenile tuber141.47
Mother_GastroMother tuber of Gastrodia elata 344.45
Mother_JuvenMother tuber of Juvenile 149.11