Detail information of GWHGAAEX016016/evm.TU.scaffold_72.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|384134118|ref|YP_005516832.1| | 7.00E-53 | glutathione peroxidase [Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1] |
| KOG | KOG1651 | 7.00E-83 | Glutathione peroxidase |
| nr | gi|380862970|gb|AFF18778.1| | 2.15E-88 | glutathione peroxidase [Dimocarpus longan] |
| Swissprot | tr|Q8L910|GPX4_ARATH | 2.00E-82 | Probable glutathione peroxidase 4 |
| trEMBL | tr|I6PBY3|I6PBY3_9ROSI | 8.00E-89 | Glutathione peroxidase {ECO:0000256|RuleBase:RU000499} |
| TAIR | AT2G48150 | 7.00E-83 | glutathione peroxidase 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 1929841 | 1933832 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016016
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00255.18 | GSHPx | 13 | 121 | 1.20E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00432 | gpx, btuE, bsaA | Metabolic pathways | map01100 |
| Arachidonic acid metabolism | map00590 | ||
| Glutathione metabolism | map00480 | ||
| Thyroid hormone synthesis | map04918 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006979 | Biological Process | response to oxidative stress |
| GO:0004602 | Molecular Function | glutathione peroxidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.280 |
| SRR2545915 | Juvenile tuber | 38.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.800 |
| SRR5643514 | five period of Gastrodia elata | 27.560 | |
| SRR5643515 | five period of Gastrodia elata | 25.600 | |
| SRR5643524 | five period of Gastrodia elata | 31.120 | |
| SRR5643525 | five period of Gastrodia elata | 40.600 | |
| SRR5643528 | five period of Gastrodia elata | 41.050 | |
| SRR5643658 | five period of Gastrodia elata | 49.800 | |
| SRR5643659 | five period of Gastrodia elata | 30.670 | |
| SRR5643660 | five period of Gastrodia elata | 24.830 | |
| SRR5643661 | five period of Gastrodia elata | 29.510 | |
| SRR5643662 | five period of Gastrodia elata | 27.620 | |
| SRR5643663 | five period of Gastrodia elata | 30.100 | |
| SRR5643664 | five period of Gastrodia elata | 29.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.960 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.860 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.860 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 40.11 |
| Juven | Juvenile tuber | 26.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.85 | |
| Mother_Juven | Mother tuber of Juvenile | 26.45 |