Detail information of GWHGAAEX016018/evm.TU.scaffold_72.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-172 | FOG: PPR repeat |
| nr | gi|743785329|ref|XP_010921876.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g19220, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|O49680|PP324_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g19220, mitochondrial (Precursor) |
| trEMBL | tr|K3XPB5|K3XPB5_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si003738m} |
| TAIR | AT4G19220 | 2.00E-172 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 1965892 | 1968630 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016018
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 124 | 149 | 0.55 |
| PF01535.19 | PPR | 226 | 252 | 0.00074 |
| PF01535.19 | PPR | 301 | 328 | 0.057 |
| PF01535.19 | PPR | 329 | 352 | 0.0031 |
| PF01535.19 | PPR | 534 | 555 | 0.016 |
| PF01535.19 | PPR | 635 | 660 | 6.00E-05 |
| PF01535.19 | PPR | 705 | 725 | 0.11 |
| PF13041.5 | PPR_2 | 731 | 777 | 1.40E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.310 |
| SRR2545915 | Juvenile tuber | 3.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.310 |
| SRR5643514 | five period of Gastrodia elata | 5.600 | |
| SRR5643515 | five period of Gastrodia elata | 5.630 | |
| SRR5643524 | five period of Gastrodia elata | 5.650 | |
| SRR5643525 | five period of Gastrodia elata | 7.790 | |
| SRR5643528 | five period of Gastrodia elata | 5.130 | |
| SRR5643658 | five period of Gastrodia elata | 7.750 | |
| SRR5643659 | five period of Gastrodia elata | 6.840 | |
| SRR5643660 | five period of Gastrodia elata | 6.390 | |
| SRR5643661 | five period of Gastrodia elata | 7.330 | |
| SRR5643662 | five period of Gastrodia elata | 9.010 | |
| SRR5643663 | five period of Gastrodia elata | 9.790 | |
| SRR5643664 | five period of Gastrodia elata | 25.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.81 |
| Juven | Juvenile tuber | 15.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.72 | |
| Mother_Juven | Mother tuber of Juvenile | 21.65 |