Detail information of GWHGAAEX016021/evm.TU.scaffold_72.53
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4479 | 2.00E-51 | Transcription factor e(y)2 |
| nr | gi|743802774|ref|XP_010926722.1| | 1.02E-68 | PREDICTED: transcription and mRNA export factor SUS1 [Elaeis guineensis] |
| Swissprot | tr|Q6NQ54|SUS1_ARATH | 3.00E-51 | Transcription and mRNA export factor SUS1 {ECO:0000255|HAMAP-Rule:MF_03046} |
| trEMBL | tr|J3L776|J3L776_ORYBR | 1.00E-63 | Transcription and mRNA export factor SUS1 {ECO:0000256|HAMAP-Rule:MF_03046} |
| TAIR | AT3G27100 | 2.00E-51 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 2014542 | 2027533 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016021
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF10163.8 | EnY2 | 28 | 109 | 4.00E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006406 | Biological Process | mRNA export from nucleus |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003713 | Molecular Function | transcription coactivator activity |
| GO:0005643 | Cellular Component | nuclear pore |
| GO:0000124 | Cellular Component | SAGA complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.520 |
| SRR2545915 | Juvenile tuber | 37.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 58.360 |
| SRR5643514 | five period of Gastrodia elata | 80.110 | |
| SRR5643515 | five period of Gastrodia elata | 61.220 | |
| SRR5643524 | five period of Gastrodia elata | 68.170 | |
| SRR5643525 | five period of Gastrodia elata | 61.090 | |
| SRR5643528 | five period of Gastrodia elata | 60.640 | |
| SRR5643658 | five period of Gastrodia elata | 63.320 | |
| SRR5643659 | five period of Gastrodia elata | 59.870 | |
| SRR5643660 | five period of Gastrodia elata | 54.350 | |
| SRR5643661 | five period of Gastrodia elata | 59.950 | |
| SRR5643662 | five period of Gastrodia elata | 50.770 | |
| SRR5643663 | five period of Gastrodia elata | 56.320 | |
| SRR5643664 | five period of Gastrodia elata | 50.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 66.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 48.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 57.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 52.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 43.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 52.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 53.730 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 56.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 56.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 88.92 |
| Juven | Juvenile tuber | 67.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 92.98 | |
| Mother_Juven | Mother tuber of Juvenile | 67.49 |