Detail information of GWHGAAEX016022/evm.TU.scaffold_72.54


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG23070Low density lipoprotein receptor
nrgi|672141485|ref|XP_008794572.1|0PREDICTED: conserved oligomeric Golgi complex subunit 2 [Phoenix dactylifera]
trEMBLtr|M0U5A9|M0U5A9_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP00970_001}
TAIRAT4G248400Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007120317542089359-
Transcript Sequence

Network for GWHGAAEX016022

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06148.10COG2281607.80E-38
PF12022.7DUF35105937192.60E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms31.970
SRR2545915Juvenile tuber30.550
SRP108465SRR5643513five period of Gastrodia elata9.630
SRR5643514five period of Gastrodia elata11.130
SRR5643515five period of Gastrodia elata9.790
SRR5643524five period of Gastrodia elata9.820
SRR5643525five period of Gastrodia elata12.100
SRR5643528five period of Gastrodia elata14.690
SRR5643658five period of Gastrodia elata14.120
SRR5643659five period of Gastrodia elata7.140
SRR5643660five period of Gastrodia elata7.840
SRR5643661five period of Gastrodia elata7.450
SRR5643662five period of Gastrodia elata7.260
SRR5643663five period of Gastrodia elata7.890
SRR5643664five period of Gastrodia elata7.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.520
SRR6049655Rhizomagastrodiae_C368-T10_good_111.220
SRR6049656Rhizomagastrodiae_C368-T07_good_111.950
SRR6049657Rhizomagastrodiae_C368-T07_good_112.250
SRR6049658Rhizomagastrodiae_C368-T04_good_114.920
SRR6049659Rhizomagastrodiae_C368-T04_good_116.710
SRR6049660Rhizomagastrodiae_C368-T01_good_111.990
SRR6049661Rhizomagastrodiae_C368-T04_good_115.490
SRR6049662Rhizomagastrodiae_C368-T01_good_112.110
SRR6049663Rhizomagastrodiae_C368-T01_good_113.010
SRR6049664Rhizomagastrodiae_C368-T10_good_111.920
SRR6049665Rhizomagastrodiae_C368-T10_good_111.920
SRP279888GastroGastrodia elata tuber 10.94
JuvenJuvenile tuber10.48
Mother_GastroMother tuber of Gastrodia elata 18.42
Mother_JuvenMother tuber of Juvenile 17.84