Detail information of GWHGAAEX016024/evm.TU.scaffold_72.56
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|312137080|ref|YP_004004417.1| | 9.00E-32 | 50S ribosomal protein L22 [Methanothermus fervidus DSM 2088] |
| KOG | KOG3353 | 2.00E-106 | 60S ribosomal protein L22 |
| nr | gi|743806605|ref|XP_010927719.1| | 1.55E-117 | PREDICTED: 60S ribosomal protein L17 [Elaeis guineensis] |
| Swissprot | tr|O48557|RL17_MAIZE | 2.00E-110 | 60S ribosomal protein L17 |
| trEMBL | tr|B3TM07|B3TM07_ELAGV | 6.00E-118 | Ribosomal protein L17 {ECO:0000313|EMBL:ACF06588.1} |
| TAIR | AT1G67430 | 2.00E-106 | Ribosomal protein L22p/L17e family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 2115518 | 2130118 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016024
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00237.18 | Ribosomal_L22 | 17 | 151 | 4.00E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02880 | RP-L17e, RPL17 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0015934 | Cellular Component | large ribosomal subunit |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 234.700 |
| SRR2545915 | Juvenile tuber | 262.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 367.190 |
| SRR5643514 | five period of Gastrodia elata | 378.140 | |
| SRR5643515 | five period of Gastrodia elata | 355.770 | |
| SRR5643524 | five period of Gastrodia elata | 372.130 | |
| SRR5643525 | five period of Gastrodia elata | 225.970 | |
| SRR5643528 | five period of Gastrodia elata | 242.530 | |
| SRR5643658 | five period of Gastrodia elata | 190.190 | |
| SRR5643659 | five period of Gastrodia elata | 414.190 | |
| SRR5643660 | five period of Gastrodia elata | 418.200 | |
| SRR5643661 | five period of Gastrodia elata | 453.370 | |
| SRR5643662 | five period of Gastrodia elata | 427.580 | |
| SRR5643663 | five period of Gastrodia elata | 403.130 | |
| SRR5643664 | five period of Gastrodia elata | 438.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 329.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 356.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 365.280 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 311.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 314.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 278.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 324.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 297.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 414.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 384.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 450.860 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 450.860 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 496.26 |
| Juven | Juvenile tuber | 428.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 222.25 | |
| Mother_Juven | Mother tuber of Juvenile | 244.92 |