Gene detail

Detail information of GWHGAAEX016025/evm.TU.scaffold_72.57

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108759753\|ref\|YP_632767.1\|	2.00E-38	M28 family peptidase [Myxococcus xanthus DK 1622]
KOG	KOG2194	0	Aminopeptidases of the M20 family
nr	gi\|743802746\|ref\|XP_010926709.1\|	0	PREDICTED: endoplasmic reticulum metallopeptidase 1 [Elaeis guineensis]
trEMBL	tr\|M0TNT0\|M0TNT0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P08770_001}
TAIR	AT1G67420	0	Zn-dependent exopeptidases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000071	2138587	2242397	-

Transcript Sequence
>GWHTAAEX016025 ATGAATCCTCCCGAGTTGATAACTGCCAGGAAACCGCCGGCAGGTGAGATGCTGAAAGCTTCACAAATCTCAAAGCGGACACGTCAGTCAGCCGATGACTTCAAGGTCGATTGACGAACAGCCCCCTCAACTTCCATGCTTCTTTCCTCTTCTTCTCCCTCTGTACTCCACCCGCATCGATTCTTCCTCTATTCTTTTCTTCCTGCGAGATCTCAACGAACAATCGATCAGATAAATCGGCACAAAGGAAGAAGTAGATTGAGGTATAAACAGAAAGGAGGATTGGCAGGGGGTGGAAGGGTGGGAGATGGGTTCATGGATGAATCCCGGGGATGCCAAGTCGTTCAAATGCCTCTTTGCCCTTACTTTCATGTACTCACTCATGGCCTTCGCATCGTACATAGTCATACACATGAGCTACATCCGCCCTTTGCCGGAAAATGCTTCTCTGGTGCGCTTTTCCGAGGGAAGGGCGTTACGGCATCTCCGCCACCTTACGGTTGACATTGATGGTCGTCAGGAGGGGCGCCCAGGATTGGAGGCGGCGGCGAAGTACATTAAAAGGGAACTGGAAGCCATTAGGAGTCGGGCTGGTCCGGAGTATAAGGTTGAGGTTGATGAGGCCTATATTAGTGGTTCTTTCAACATGATTTTTTTGCGACATAGCATATCTCTTGCATACAGAGGTCATAGGAACATTGTTTTAAGGGTTGCTTCAAAATTTTCAAAAGAAAACGATTCATCTGTTTTGGTGAATGGTCACTTTGACGGTCCAATTGGTTCTGCAGGTGCAGGGGATTGTGGTTCTTGCGTTGCATCTATGCTAGAGCTAGCAAGGCTTGTTGTTGATTCAAATTGGATTCCACCCAAACCGATTATATTTCTTTTCAATGGTGCTGAAGAACTTTTTCTTTTGGGTTCTCATGGGTTTGTGAAGTCACATAAATGGAGCCATACAGTCGGAGCTTTTATTAATGTAGAAGCATCTGGAACTGGTGGTCTTGATTTAGTTTGCCAATCTGGGCCTGGTTCTTGGTCTGCATTTGTTTATGCTCAAGCAGCAAAATATCCTATGGCAAGCAGCGTGGCACAGGATGCTTTTGGTATTATTCCTGGAGATACAGATTTTAGAATTTTTGCTGAAGATTATGGCAATATTCCAGGACTTGATATCATCTTTGTTTTGGGCGGTTATTATTATCATACATCTTATGATACAATGGAGAAATTATTACCTGGAAGCATCCAAGCACGTGGAGAAAATCTATTTCGCCTGCTTGATGCATTCGCAAGTTCTGCGATGCTGCAAGATGCCAAACAGAGAAATCTGAAAGTTCCCGCAACCAAGAAGAGTAATGATCGTGCTGTATACTTTGACTACCTATCTCTTTTTATGATATATTACTCCAGAAAAATGGCAATTGTATTTCACAGTCTTCCAGTGGTCATATTTCTCTTCATGCCACTGCTACTTCAGTATCCAAATATTACACTACACTCTTGGTTGTCAACCTTTACTTGCTTCATAAAGGGAATGTTGATTCATGCCACTGCTGCTATTCTTGCGATTGTCATTCCAGTATTGTTTTCAGTGCTAAGATTGCTCTTGTCAGGCCATGCAATGAGCTGGTTTGCTCGTCCATATTTGGCCTTTTTGATGTTTATCCCTAGCTCTCTAATGGGTTTGCTTATTCCAAGGGCTATATGGAGATCACTTCCAGCCTCTCAAAATGTCTTGTCTGAGAACATGCCAAAAAAGTTTCTCTCAGATGAACCATTTTTTTGGGGAGCATTCGGGCTATATGCTTTTATGACCTTGGCTTATCTACTATCTGGGCTTGGAGGAGGATACCTGACATTCTTAATGTCAACTTCCATGCTTATTGCATGGTTTTTTTTTTGTCTAGCACGAAGGTGTTTTGGAGATCAATCAGCAAAATCATTGGCAGGGTATGTGATTCCTTCAATCCCAGGCCTCACATATTTGACCTACTTTGGTGGGTTTGTTGTCCAGTTTATGATTGAGAAGCTGGGCATGATGGGTTCTCTTCCAATGCCATATGGGTTTTTTGTACCTGATGCTATAGTGGCAGCAACTATTGGTGTTGTTACCGGATGGTGTGTGGGCCCTGTATTACCTCTTGTCAGTCGTTGGTTGGCTAAACCATCGATTTTACGATCCTTGTTTCAGATGAGCATGCTGGGTTTAGCTATTTCAACACAGTTCTTTCCATACAGTGAAACTGCACCAAAGAGGGTTGCTCTTCAGTATACAGTTAGGCATGCAGATGCTAGTAAGATCATCGACGCCAGCTTTGATTTTTCTGTCGTGGATGCCAATTCATTAACTTTCCTTTTCAAGAATTCTCCGGAAGTTGCAAAAATGTTGCATATTGGTTCAAATTTTTCTTTTGAAGCAGATCAGCATTCTATCAAAAGTTCTTGGGTGGTGCTATTCCCTGTATCCTTTTTATTCTCTGGAAGCCTGAAGTTTCCTGCACCTCATAACGATATCTATAAACAATACATTTTCTTACCTCACCTGTCAATTGATGAGTCAGCTTCACTTTCTATAACTGGATCTCGAAGAGTGCACCTTACTTTGGACTTGGGCTCATTAAAAGAGGTCTGGGTAACAGTGCTTAATATTACCGGTCCCTTGTCAAACTGGTCCTTTGCTGACAACAAACTCCCAGCTGCTGAATCAATGGATGGTGGACCGCCATCTTACATATGCAGACTCAGTGGACGCAGTCACGAAAAATGGACATTCTGGTTGGAGGCTAATGCTGCTGAGGCACTGAGGGTTGACGTTGCTGTTCTGGACCAGCATTTGTTTGATGATACAAGGAAATTGAAGAGCCTTTTCCCCAGTTGGGTTGATGTTACTACCTTCTCCTCATTTTTGTCATCCTATTATTTTTAAACTCCCATTTT

Network for GWHGAAEX016025

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04389.16	Peptidase_M28	138	320	1.80E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.090
SRP064423	SRR2545915	Juvenile tuber	33.130
SRP108465	SRR5643513	five period of Gastrodia elata	31.230
	SRR5643514	five period of Gastrodia elata	28.290
	SRR5643515	five period of Gastrodia elata	37.260
	SRR5643524	five period of Gastrodia elata	33.020
	SRR5643525	five period of Gastrodia elata	45.300
	SRR5643528	five period of Gastrodia elata	55.650
	SRR5643658	five period of Gastrodia elata	67.140
	SRR5643659	five period of Gastrodia elata	36.300
	SRR5643660	five period of Gastrodia elata	36.220
	SRR5643661	five period of Gastrodia elata	45.140
	SRR5643662	five period of Gastrodia elata	46.790
	SRR5643663	five period of Gastrodia elata	29.270
	SRR5643664	five period of Gastrodia elata	25.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	31.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.510
SRP279888	Gastro	Gastrodia elata tuber	39.72
	Juven	Juvenile tuber	48.56
	Mother_Gastro	Mother tuber of Gastrodia elata	130.81
	Mother_Juven	Mother tuber of Juvenile	122.59